Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1596 ATGGCTTCAGCGAGCAGAGCAGCAACTTCACTCCCCGAAGTTCAGACTTCACGAGCAAGCAACAACAGAACTCATAACACGGACTCGCATTCCACAAAAGTCACCTCCAACTCTGTCCTCGATCAAGACAGTACGCCTTACCTATTCAAAATCCAAAGAGGCCGCTATATTCAACCCTTTGGTTGCGTGCTTGTGGTAGACGAGGCCACTTTTCGTGTTCTGGGGTACAGCGAAAACGCATGGGATTATCTGGGTATCAAAATGTCTGAAACTCTTGCGATAGGGTCTGACGTTCGGACGCTCTTCACCCCATTTAGCGTTGTTCTGCTCGAAGAGGCATTTGAGGCTCAGGAAGTCACACAGATGAACCCCATTTGGCTTCATTCTAAGAATTCGGGGAAGCCGTTTTATGCGATTTTGCATAGGATTGATGTCGGGATTGTGATTGATTTGGAGCCTGCCAGAACAGAGGACCCTGCTTTGTCCATTGCTGGGTCGGTGCAGTCTCAGAAGCTAGTGGGGCGTGCAATTTCGCAGTTACAATCATCCACTGGTGGGGATATTAAGCTTTTTTATGATACTATAGTTGAGAGTGTCAGAGAACTTACCGGCTATGATAGGGTGATGGTGTACAAATTTCACGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGCCAGACTTGGAGCCTTATATCGGATTGCATTATCCTGCTACTGATATTCCTCAGGCTTCGAGGCTTTTGTTCAAGCAGAATCAAATTAGGATGATTGTGGATTGCCATGCCACTCCTGTTCGGGTGATTCAGAGTGAAGGTCTTATGCAGCCTCTGTGCTTGACTGGATCAACCCTTCGTGCCCCACATGGCTGTCATGCCGAGTACATGGCCAATATGGGCTCAACTGCTTCATTGGTTATGGCAGTCATACTCAATGGAAATGATGAGGAAGGTATTAGTATTTGTACCTCAATGAGGAGGCTATGGGGCTTGGTTGTTTGTCATCACACTTCTGCTCGATGCATTCCGTTCCCTCTACGTTATACATGTGAGTTTCTTATGCAAGTTTTTGGGCTCCAGTTGAATGTGGAACTTCAATTGGCATCACAGTTAATGGAGAAACGAGTTTTGAAGACCCAAACTCTCTTGCGTGACATGCTCCTTCGGGACCCTCCGACTGGCATTGTTACTCAAAACCCTAGTATTATGGACCTTATGAAGTGTGATGGAGCAGCTCTCTACTTCCAAGGAAACTACTACCCCTTAGGTATCACCCCATCTAAGTCCCAGGTAAAGGACATTATAGAGTGGTTACTGGCCTTCCACAGAGATTCGTCAGGCATAAGAACTGATAGTCTAGCTGATGCAGGGTATCCTGGGGCTGCTTCCCTTGGTGATGCAGTTTGTGGGATGACTGTTTGTTATATCACAGAGAAAGATTTTCTATTCTGGTTCAGATCTCGAAAAGCAAAAGAGATCAAATGGGGTGGTGCAAAGGACAACGATGATGAACAGCAAATTCATCCACGTTCTTCATTCAAGGCATTTGTGGAAGTGGTAAAAGGCCAGAGTTTCCCGTGGGAGAATGTGGAAATGGATGCAGTTCACTTTTTGCGGCTTATTCTGCAAGAATCTATGAAAGATGCTGAGCACAGCTATTCTAAGTCTGTTGTACATTCCCAGGTTGGGCATCAAGAGTTGAAAGGCCTGGATGATCTAAGTACTGTGGCTAAAGAAATGGTTAGATTGATAGAAACTGCCACTGCTCCCATATTTGCTGTTGATGCTGATGGACGCATAAATGGGTGGAATGCTAAGGTTGCAGAATTGACTGGACTATCATTTGAGGAAGCTGTGGGGAAGTCATTGGTTCATGATCTTGTGCATAAAGAGTCTGAAGAAACTGTAGATAGGCTTCTTCACCATGCTTTAAGAGGAGAAGAAGATAATAATGTTGAGATAAAATTGAAGACCTTCGGCCCAAAACATTATAAGATGGCAGTTTTTATAGTGGTGAATGCTTGCTCCAGCGAGGATTCTACAAATAATGTAGTTGGAGTATGCTTTATTGGTCAGGATATTACTGGTCAAAAAGTGGTGATGGACAAATTCATTCACTTACAAGGTGACTACAAGGCTATTTTACATAGCCCAAGTCCCTTGATCCCTCCCATTTTTGCATCAGATGAAAACACTTGCTGCTCAGAGTGGAACACTGCCATGGAAAAGCTTACAGGTTGGGTTCGTGGGGATGTCATTGGGAAATTGCTGGTAGGAGAGGTTTTTGGCGGCTGCTGTCGACTCATGGGTTCAAATGCTCAAACCAAGTTCTTGATTGTCTTGCACAATGTGCTTGGTGGACAAAATATAGACAAATTCCCACTGCTATTCCTTGATCGGCATGGAAAGTATGTGCAAGCTCTTTTGACTGCACATAAAAGGGTAAACATGGATGGTCAGATTATGGGGGCTTTCTGCTTCTTGCAAATTGCAAGTCCTGAACTTCAACAGGCTCTGAAAATCCAGAGGCAACAGGAGAAGAATTGCCTTACTGCAGTGAAAGAGTTAGCTTACATTTGTCAAGAAATAGAAACTCCTTTGAGTGGCATACGCTTTATAAACTCTCTTTTGGAGGGTACAGACTTGAGTGATGATCAATATCAGCTTCTTGAGGCTAGTGCTGCTTGTGAGAAGCAGATGTTCAAGATAATGCAAGATGTTGATCTAACGAGCATTGAGGATGGGTCCTTAGAGCTTGAGAATGGGGAATTCTTACTTGGGAATGCAATAAATGCAGTTGTTAGCCAAGTGATGTTATTGCTAAGAGAGAGAAATTTACAGTTGATTCGTGACATTCCTGAAGAAATTAAGACATTGACTGTTTATGGTGATCAATTAAGGATTCAACAGGTTTTGGCCGATTTCTTATTGAGTATGGTACGCTATGCGCCATCTTCAGATGGTTTTGTAGAGATTCATGTTTACCCAAGATTAAAACAAATTTCTGATGGACTTACTCTTCTCCATGCTAAATTCAGGATGATATGCCCAGGAGAAGGTCTTCCTCATGAAGTGATTCAAGACATGTTCCATCACAGACAGTGGAGGAGTCAAGAAGGCTTAGGGCTCAGCATCAGTAGGAAGATACTGAAACTCGTGAATGGTGAGGTCCAATATATAAGGCAGGCTGAACGATCCTATTTCTTTATTACTCTTGAACTACCCTTGATTCGGTGA 3240 0.438 MASASRAATSLPEVQTSRASNNRTHNTDSHSTKVTSNSVLDQDSTPYLFKIQRGRYIQPFGCVLVVDEATFRVLGYSENAWDYLGIKMSETLAIGSDVRTLFTPFSVVLLEEAFEAQEVTQMNPIWLHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGSVQSQKLVGRAISQLQSSTGGDIKLFYDTIVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRLLFKQNQIRMIVDCHATPVRVIQSEGLMQPLCLTGSTLRAPHGCHAEYMANMGSTASLVMAVILNGNDEEGISICTSMRRLWGLVVCHHTSARCIPFPLRYTCEFLMQVFGLQLNVELQLASQLMEKRVLKTQTLLRDMLLRDPPTGIVTQNPSIMDLMKCDGAALYFQGNYYPLGITPSKSQVKDIIEWLLAFHRDSSGIRTDSLADAGYPGAASLGDAVCGMTVCYITEKDFLFWFRSRKAKEIKWGGAKDNDDEQQIHPRSSFKAFVEVVKGQSFPWENVEMDAVHFLRLILQESMKDAEHSYSKSVVHSQVGHQELKGLDDLSTVAKEMVRLIETATAPIFAVDADGRINGWNAKVAELTGLSFEEAVGKSLVHDLVHKESEETVDRLLHHALRGEEDNNVEIKLKTFGPKHYKMAVFIVVNACSSEDSTNNVVGVCFIGQDITGQKVVMDKFIHLQGDYKAILHSPSPLIPPIFASDENTCCSEWNTAMEKLTGWVRGDVIGKLLVGEVFGGCCRLMGSNAQTKFLIVLHNVLGGQNIDKFPLLFLDRHGKYVQALLTAHKRVNMDGQIMGAFCFLQIASPELQQALKIQRQQEKNCLTAVKELAYICQEIETPLSGIRFINSLLEGTDLSDDQYQLLEASAACEKQMFKIMQDVDLTSIEDGSLELENGEFLLGNAINAVVSQVMLLLRERNLQLIRDIPEEIKTLTVYGDQLRIQQVLADFLLSMVRYAPSSDGFVEIHVYPRLKQISDGLTLLHAKFRMICPGEGLPHEVIQDMFHHRQWRSQEGLGLSISRKILKLVNGEVQYIRQAERSYFFITLELPLIR 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1596 1079 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 187 356 IPR016132 -
Dere14g1596 1079 Pfam PAS fold 580 695 IPR013767 GO:0006355
Dere14g1596 1079 Pfam PAS fold 711 830 IPR013767 GO:0006355
Dere14g1596 1079 Gene3D - 371 540 IPR043150 -
Dere14g1596 1079 CDD HATPase_Phy-like 963 1075 IPR044767 -
Dere14g1596 1079 SMART HKATPase_4 964 1079 IPR003594 -
Dere14g1596 1079 FunFam Phytochrome 573 705 - -
Dere14g1596 1079 PRINTS Phytochrome signature 481 500 IPR001294 GO:0006355|GO:0009584
Dere14g1596 1079 PRINTS Phytochrome signature 673 690 IPR001294 GO:0006355|GO:0009584
Dere14g1596 1079 PRINTS Phytochrome signature 102 124 IPR001294 GO:0006355|GO:0009584
Dere14g1596 1079 PRINTS Phytochrome signature 287 308 IPR001294 GO:0006355|GO:0009584
Dere14g1596 1079 PRINTS Phytochrome signature 580 596 IPR001294 GO:0006355|GO:0009584
Dere14g1596 1079 PRINTS Phytochrome signature 202 221 IPR001294 GO:0006355|GO:0009584
Dere14g1596 1079 PRINTS Phytochrome signature 599 614 IPR001294 GO:0006355|GO:0009584
Dere14g1596 1079 PRINTS Phytochrome signature 396 416 IPR001294 GO:0006355|GO:0009584
Dere14g1596 1079 PRINTS Phytochrome signature 693 713 IPR001294 GO:0006355|GO:0009584
Dere14g1596 1079 ProSiteProfiles PAS repeat profile. 711 763 IPR000014 -
Dere14g1596 1079 SMART HisKA_10 852 916 IPR003661 GO:0000155|GO:0007165
Dere14g1596 1079 Pfam Phytochrome region 381 549 IPR013515 GO:0006355|GO:0009584
Dere14g1596 1079 SUPERFAMILY PYP-like sensor domain (PAS domain) 583 690 IPR035965 -
Dere14g1596 1079 CDD HisKA 857 908 IPR003661 GO:0000155|GO:0007165
Dere14g1596 1079 ProSiteProfiles Histidine kinase domain profile. 859 1079 IPR005467 -
Dere14g1596 1079 SUPERFAMILY PYP-like sensor domain (PAS domain) 51 157 IPR035965 -
Dere14g1596 1079 SUPERFAMILY GAF domain-like 374 547 - -
Dere14g1596 1079 Gene3D - 897 1070 IPR036890 -
Dere14g1596 1079 SMART gaf_1 187 376 IPR003018 GO:0005515
Dere14g1596 1079 CDD PAS 722 830 IPR000014 -
Dere14g1596 1079 SMART pas_2 710 779 IPR000014 -
Dere14g1596 1079 SMART pas_2 579 646 IPR000014 -
Dere14g1596 1079 FunFam Phytochrome 915 1079 - -
Dere14g1596 1079 ProSitePatterns Phytochrome chromophore attachment site signature. 287 296 IPR013516 -
Dere14g1596 1079 MobiDBLite consensus disorder prediction 1 37 - -
Dere14g1596 1079 FunFam Phytochrome 371 504 - -
Dere14g1596 1079 Gene3D - 168 523 IPR029016 -
Dere14g1596 1079 ProSiteProfiles PAS repeat profile. 577 648 IPR000014 -
Dere14g1596 1079 Gene3D PAS domain 51 290 - -
Dere14g1596 1079 SUPERFAMILY PYP-like sensor domain (PAS domain) 725 828 IPR035965 -
Dere14g1596 1079 CDD PAS 588 695 IPR000014 -
Dere14g1596 1079 PANTHER OS08G0260000 PROTEIN 43 914 - -
Dere14g1596 1079 Pfam PAS fold 47 154 IPR013654 GO:0006355
Dere14g1596 1079 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 928 1073 IPR036890 -
Dere14g1596 1079 Gene3D PAS domain 571 707 - -
Dere14g1596 1079 Pfam GAF domain 189 366 IPR003018 GO:0005515
Dere14g1596 1079 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 964 1074 IPR003594 -
Dere14g1596 1079 Gene3D PAS domain 724 836 - -
Dere14g1596 1079 SUPERFAMILY GAF domain-like 167 363 - -
Dere14g1596 1079 FunFam Phytochrome 724 832 - -
Dere14g1596 1079 NCBIfam PAS domain S-box protein 584 699 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1596 Dere-ChrDere14 17519946 17524018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1596 27 1077 Histidine Kinase Gene Family AT4G16250 66.667 0.0 1492