Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1592 ATGGCTTCGTCCTCTTCCTTGTTCATAAACGCAGTTCTGTGTCTCGTGGTGTTGTTGTTCTTCGTGATATGCCCTACTTCTCTTGGTCATGGCGACAAAATTGTTAAGAAACAAGTGATAGACTCTCCTTTAATAACGAAGAACATTCCTACGAATCGAACCATTAAGGTGGATGTCAATGGCGATGGAGAATTCAGATCTGTCCAAGCTGCCATTGATTCCATTCCTGAAGGGAATTCTCAGTGGGTCATCGTCCATCTTAGGAAAGGAGTATACAGAGAGAAGGTACACATACCAAAGAGCAAGCCCTATATATTTTTGAGAGGGAATGGGAGAGGCAAAACTGCCATAGTTTGGTCTCAGAGTTCTGTGGATAACATCGAGTCTGCAACCTTCAAGGTTGAAGCCCGTAACTTCATTGCCTTCGGAATCAGCTTCAAGAACGAGGCACCAACTGGGGTGGCTTATACATCGCAGAACCAATCAGTGGCTGCATTTGTAGCAGCAGATAAAGTGGCATTCTATCACTGTGCATTCTATAGCACTCACAATACTCTCTTTGATTACAAAGGAAGGCATTACTATGAGTCTTGCTACATTCAAGGTTCCATTGACTTCATTTTTGGCCGTGGCAGATCCCTCTTCGATAAATGTGAGATATTTGTGATAGATGACAAAAGAACAACAATTAAAGGGTCTATCACAGCACAAAATAGGGAGGAGGCTTCTGAGGAAAGTGGGTTTGTGTTTAACAAAGGGAAGGTGTATGGCATAGGAGGGGTGTACCTAGGAAGGGCCAAGGGTCCTTATTCTAGGGTCATCTTTGCCCACACCTATCTCTCTGCCACCATTGTCCCTGAAGGCTGGGCTCGCTGGAGCTATGCTGGCAGCACAGACAATTTATTCCATGCTGAGTACAAGTGCTCTGGACCTGGATCCAACACCACAGCTCGTGTGCCATGGGCGAAGCAACTCACTAACAAAGAAGCTGCTCCTTTCATCTCTGTTGATTTCATTGATGGCAAAGAATGGCTTCCTGTGTGGCTCTAA 1050 0.4514 MASSSSLFINAVLCLVVLLFFVICPTSLGHGDKIVKKQVIDSPLITKNIPTNRTIKVDVNGDGEFRSVQAAIDSIPEGNSQWVIVHLRKGVYREKVHIPKSKPYIFLRGNGRGKTAIVWSQSSVDNIESATFKVEARNFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKVAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRSLFDKCEIFVIDDKRTTIKGSITAQNREEASEESGFVFNKGKVYGIGGVYLGRAKGPYSRVIFAHTYLSATIVPEGWARWSYAGSTDNLFHAEYKCSGPGSNTTARVPWAKQLTNKEAAPFISVDFIDGKEWLPVWL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1592 349 Gene3D - 49 348 IPR012334 -
Dere14g1592 349 SUPERFAMILY Pectin lyase-like 51 347 IPR011050 -
Dere14g1592 349 Pfam Pectinesterase 56 341 IPR000070 GO:0030599|GO:0042545
Dere14g1592 349 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
Dere14g1592 349 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 46 345 - -
Dere14g1592 349 FunFam Pectinesterase 49 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1592 Dere-ChrDere14 17484477 17487774 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1592 52 345 Carbohydrate Esterase AT5G47500 40.461 5.92e-76 236