Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1557 ATGGCTCGCATTCCCTATCCATATGGTGATCCTTTTTTCGGTGGTTCAATAGTTTCTTATGGTTCACAGGCTGGTAATCAACCCCAAATGGTGCCCCAAATGCTGGGGTTAGCATCCACCAGGGTTGCATTACCACTTGATCTTGCAGAAGACGGGCCTATTTATGTCAATGCTAAACAATACCATGGCATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCATCGCCATGCATTGAACCGGGTTAGGGGATCTGGGGGACGCTTTCTCAGCACCAAACAGCTTCAACAGTCCAATGCAGAAGTTGTGACTGGTACAAACTCTGGCTCAGACTCTGTCAATTTGTATCAAAAGAAAGATGCATCAGAGGTGGAGATTCATCCCTCAAGGACTGGCGAAAATGCATCTTCCATCTCAACCTGCTCTGACATGACAAGTGTGTCCAGCAACAATGTCAATTTTAGGCAGCCTGAGCGAAAGTTCTTGGGGAACTCTAACATGGGCGCAGCATCACAGTGCAGCGGGGGACTCACCTTCAGTGGGACCCAGCACCGTGCTTCAATTGTCCGGTGA 627 0.4833 MARIPYPYGDPFFGGSIVSYGSQAGNQPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLQQSNAEVVTGTNSGSDSVNLYQKKDASEVEIHPSRTGENASSISTCSDMTSVSSNNVNFRQPERKFLGNSNMGAASQCSGGLTFSGTQHRASIVR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1557 208 ProSitePatterns NF-YA/HAP2 subunit signature. 55 75 IPR018362 GO:0003677|GO:0016602
Dere14g1557 208 ProSiteProfiles NF-YA/HAP2 family profile. 50 110 IPR001289 GO:0003700|GO:0006355
Dere14g1557 208 Gene3D - 50 112 - -
Dere14g1557 208 SMART cbf3 49 110 IPR001289 GO:0003700|GO:0006355
Dere14g1557 208 PRINTS CCAAT-binding transcription factor subunit B signature 53 75 IPR001289 GO:0003700|GO:0006355
Dere14g1557 208 PRINTS CCAAT-binding transcription factor subunit B signature 84 107 IPR001289 GO:0003700|GO:0006355
Dere14g1557 208 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 169 IPR001289 GO:0003700|GO:0006355
Dere14g1557 208 MobiDBLite consensus disorder prediction 112 131 - -
Dere14g1557 208 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 53 107 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1557 Dere-ChrDere14 17030471 17031916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1557 2 116 CCAAT-HAP2 Transcription Factor Family AT1G17590 61.538 3.35e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dere14g1557 CBFB_NFYA 2.5e-27 No_clan