LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g1529	ATGGGTAGAGGAAGAGGCATAACAGGGTGTTGGTGTTGTTTGGTGTTGCTAACTCTGCTTCTCATACAGGAAGCAAAGAGTTCAATTGAGGAGAGCATAGGGTGTGCTCCGTCTCGTTGCGGCGAAATCACAAACATAAGATATCCCTTTCGACTGCGAGATGATCCAGCGAAGTGCGGCGACCCCACATACGAGTTAGCCTGCGAGAACAACGTCACTCTGCTTCATTTGTACTCAGGAACGTACCGTGTGCTGAGAATCAACTACAACAACTCCACAATCCGACTCGTGGATCCTGGCATTCAAGAGGGTGATTGCTCTTCCCTGCCTCGCTATTTCTTGTACCAATCTAATTTCACCGATACTTTCAATTATTCCTTCCGTTACGACCCGGATCCCTATCTTGCCTCTCTGTGGCCAGACTCGAAACCTATATTCGAGCACGTCGTTTACTTGAACTGTAGCGATCCAGTGAGGGACGACCCAGAGTACGTGGATACGTCTCCATGCGTGAATTGGGAGTCCAAAGGGAAAGCTTATATCTATGCTCTGGTTGGAGACCTAGTGGTTGACAAGTTAAAATCTCAGTGTGGTGTGAAATTGGTGGCTACCATTACCTCAAATTGGAGTTCCTTCTTACAGGGAGAAAGCTTGTCGTACGCTGAGATTCACAGGGTTCTGTCCTATGGATTTGAGGTATACTGGTGGAAGCGAGCTTTCAAACCTGGCATTCAAAATGTCCAACGCTATCAGGGTCAACACTACTGTGCTACTCCCATGGGAATAATGTATTATACCGATTGTCGAAAGCTGGCAAAGTTGCGCATATTTGCAGAAGATTATCTCTACGGTATTTATAAAGGACTACCCCAAATAGTGAGCGAGGATACATACCATCACTACATTTACTACGATGTTAGCCTATCACAACCTGCCATTGTCTTAGGAGAAATTACTAGAAGATGTGTTTTGCTATACATTGCTGCCAGACTTCTATTTGGTATCACATTCCTACTTGCGTTGTTAATTTATACATGCAGAAGAAGACACTTATCGATGTATGAAAATATTGAAGAATTTTTGCAACTTCATAATCTCATTCCAATAAGGTACTCCTACAAGGAATTGAAAACAATGACTAAAGGGTTCAAGAACAAGTTAGGTGAAGGAGGCTTCGGCACTGTATACAAAGGGAAGCTAAGCAGTGGCCCTTTTGTTGCTATCAAAATGTTGGGTAAATCCAAAGCTAACGGCCAAGAATTCATCAATGAAGTGGCAACCATTGGAAGGATACACCATTTCAATGTGGTACACCTTGTTGGATTTTGTGTGGAAGGAACAAAGCGTGCTCTTGTTTATGAATTTATGCCCAATGGATCTCTAGATAAATATATTTTCTCAAAAGAAGAAAGTGTGCCCTTGAGTTATGAGAAAATATTTGAAATATCTCTTGGAGTGGCTCGTGGGATTGCTTATCTTCATCATGGTTGTGAGGTGAAAATATTGCATTTTGATATCAAGCCTCATAACATTCTTCTTGATGACAACTTCACCCCAAAAGTTTCTGATTTTGGACTTGCAAGGTTATATCCAGTTGATGATAGCATTGTCACTTTGACCGCAGCGAGAGGAACAATAAGGTATATGGCTCCTGAATTGTTTTACAAGAATATTGGGGGAGTGTCCTATAAGGCTGATGTTTACAGTTTTGGGATGCTGCTGATGGAAATGGCAAATCGAAGGAGGAACTTGAATGCAAATGCAGAGCATTCAAGTCAACTTTACTTTCCCTTGTGGATTTATGACCAATTTGATGAAGAGAAAGATATAGAAATGGAAAATTTGACCAAAGAAGAAAAGGATTTAGTCAAGAAAATGTTGATAGTAGCATTGTGGTGTATTCAATTGAAACCTATAGATCGTCCCTCAATGAATAAAGTATTAGAGATGTTAGAAGCTAATAATGTTGAAAGCCTTGAAATGCCTCCAAAACCTTCTCTATATCCTAGTGAGATGGTTCTTATGGATGACATATCCAACTTTGACGAAACAACAGCCACTAACTCCATTCATTCTCCTAGTAGTCTAGGTGAGGTTGCATGTGATGGGGTCGCAAATTGCTAA	2124	0.4129	MGRGRGITGCWCCLVLLTLLLIQEAKSSIEESIGCAPSRCGEITNIRYPFRLRDDPAKCGDPTYELACENNVTLLHLYSGTYRVLRINYNNSTIRLVDPGIQEGDCSSLPRYFLYQSNFTDTFNYSFRYDPDPYLASLWPDSKPIFEHVVYLNCSDPVRDDPEYVDTSPCVNWESKGKAYIYALVGDLVVDKLKSQCGVKLVATITSNWSSFLQGESLSYAEIHRVLSYGFEVYWWKRAFKPGIQNVQRYQGQHYCATPMGIMYYTDCRKLAKLRIFAEDYLYGIYKGLPQIVSEDTYHHYIYYDVSLSQPAIVLGEITRRCVLLYIAARLLFGITFLLALLIYTCRRRHLSMYENIEEFLQLHNLIPIRYSYKELKTMTKGFKNKLGEGGFGTVYKGKLSSGPFVAIKMLGKSKANGQEFINEVATIGRIHHFNVVHLVGFCVEGTKRALVYEFMPNGSLDKYIFSKEESVPLSYEKIFEISLGVARGIAYLHHGCEVKILHFDIKPHNILLDDNFTPKVSDFGLARLYPVDDSIVTLTAARGTIRYMAPELFYKNIGGVSYKADVYSFGMLLMEMANRRRNLNANAEHSSQLYFPLWIYDQFDEEKDIEMENLTKEEKDLVKKMLIVALWCIQLKPIDRPSMNKVLEMLEANNVESLEMPPKPSLYPSEMVLMDDISNFDETTATNSIHSPSSLGEVACDGVANC	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g1529	707	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	501	513	IPR008271	GO:0004672\|GO:0006468
	Dere14g1529	707	SUPERFAMILY	Protein kinase-like (PK-like)	365	652	IPR011009	-
	Dere14g1529	707	ProSiteProfiles	Protein kinase domain profile.	381	659	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere14g1529	707	ProSitePatterns	Protein kinases ATP-binding region signature.	387	409	IPR017441	GO:0005524
	Dere14g1529	707	Pfam	Wall-associated receptor kinase galacturonan-binding	35	98	IPR025287	GO:0030247
	Dere14g1529	707	Pfam	Protein kinase domain	384	649	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere14g1529	707	Gene3D	Phosphorylase Kinase; domain 1	355	455	-	-
	Dere14g1529	707	SMART	serkin_6	381	651	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere14g1529	707	Gene3D	Transferase(Phosphotransferase) domain 1	456	661	-	-
	Dere14g1529	707	FunFam	PR5-like receptor kinase	456	663	-	-
	Dere14g1529	707	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	354	671	IPR045874	GO:0004672
	Dere14g1529	707	FunFam	serine/threonine-protein kinase PBS1-like	351	455	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g1529	Dere-ChrDere14	16518558	16523337	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g1529	307	686	Receptor kinase-like Gene Family	AT5G38280	44.416	2.52e-105	334

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Dere14g1529		Pkinase	5.1e-47	CL0016