Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1460 ATGACTAATGTATTCTCGATGGGCAAAGAGTATGTTAAAGTTGGAGCAGTGGTTCCTGAGACTGTATTGAAAAAGCAGAAGAGGAACGAGGAATGGGCTCTGGCAAAAAAGCAGGATCTTGAAGCTGCCAAGAATAAGAGATCTGAAACACGTTTTATTGGTTCATTTCTAGCTGCTCACATGTTGGCTTTGTTGAAAATATATGTTCAGCAAAAGGAGCTGATTAGATTGAAGCGCAAAGCAAAGCTTAAGGGTGGGTTTTATGTCGACCCTGAAGCGAAGCTGTTGTTCATCATCAGGATCCGTGGGATCAATGCTATGCACCCAAAAACAAGGAAGATTTTGCAGCTTCTGCGTCTGAGACAGATTTTTAATGGTGTCTTTCTCAAAGTTAACAAAGCCACTATGAATATGCTACACAGGGTTGAGCCTTACGTTACTTATGGGTACCCTAATTTAAAGAGCGTCAAGGAACTGATCTACAAGACGGGTTTTGGGAAAGTTAACAAGCAGAGAATTCCTTTGACTGACAACTCTATCATCGAACAGGACTTGGGTCAGCATGGGATTATTTGCGTGGAAGATCTGATCCACGAGATCATGACTGTTGGACCTCACTTCAGGGAGGCAAATAACTTCCTATGGCCCTTCAAGCTAAAGGCTCCGCTAGGTGGTTTGAAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGATGCTGGCAACCGTGAAGATTATATTAATGAGCTTATCAGAAGGATGAATTAG 765 0.4196 MTNVFSMGKEYVKVGAVVPETVLKKQKRNEEWALAKKQDLEAAKNKRSETRFIGSFLAAHMLALLKIYVQQKELIRLKRKAKLKGGFYVDPEAKLLFIIRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVKELIYKTGFGKVNKQRIPLTDNSIIEQDLGQHGIICVEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1460 254 FunFam 60S ribosomal protein L7 200 254 - -
Dere14g1460 254 NCBIfam 60S ribosomal protein uL30 19 254 IPR005998 GO:0000463|GO:0003735|GO:0022625
Dere14g1460 254 PANTHER 60S RIBOSOMAL PROTEIN L7 16 254 IPR039699 -
Dere14g1460 254 FunFam 60S ribosomal protein L7 95 199 - -
Dere14g1460 254 Pfam Ribosomal L30 N-terminal domain 18 91 IPR012988 -
Dere14g1460 254 CDD Ribosomal_L7_archeal_euk 95 254 IPR035808 -
Dere14g1460 254 Pfam Ribosomal protein L30p/L7e 96 146 IPR016082 -
Dere14g1460 254 SUPERFAMILY Ribosomal protein L30p/L7e 95 254 IPR036919 -
Dere14g1460 254 Gene3D - 95 199 IPR036919 -
Dere14g1460 254 Gene3D - 200 254 IPR036919 -
Dere14g1460 254 ProSitePatterns Ribosomal protein L30 signature. 114 146 IPR018038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1460 Dere-ChrDere14 15455367 15457658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1460 16 254 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 79.167 2.12e-136 382
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g1460 14 15455367 15457658 Dere14g1460 14 15455367 15457658 ECH