LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g1408	ATGCCTATTGCAGTTCTGCTCCCCGTGAAAATATATGTTGCAATTATGGTATATAGAAGATGTACTCGCCGAAGTAGCGAACCAGCTAGACCGGTTAGTGCAGTTGCAGACACAGAATTTCTGACATACACCATGGACAAGTTTCTGCAGGAAATGGAAAGAGAGAAGCCTATCAGGTTCACTTCGCATCTCCTAATGCTTGCAACTAACAACTACTCCTGCACTCTGGGGTCAGGAGGTTTTGGAGCAGTCTATAAAGGGAGTTTTAGTGATGGAACCACTGTGGCCGTGAAGGTTCTGTATGGGAGTTCTGACAAGAGAATAGAGGAGCAGTTCATGGCAGAAGTGGGTACAATTGGGAGAGTTCATCATTTCAATCTAGTTCGCCTCTATGGATTTTGCATCGAAAGGCATATGAGGGCTCTAGTTTATGAGTACCTGGACAATGGCTCGCTTGACAAGTATTTGTATCATGAAAACAAGACCTTAGGATTTCAAAAGCTTCATGAGATTGCACTTGGAACAGCAAGAGGCATTGCATACCTGCATGAAGAGTGCCAACAAAGAATCATCCACTATGACATAAAACCAGGTAACATCCTCTTGGATCAAAACTTTTGTCCTAAAGTTGCAGATTTTGGTTTGGCCAAGTTTTGTAACAGGGAAAATACTCATATTACTATGACTGGAGGAAGAGGGACCCCTGGTTATGCCGCACCGGAACTTTGGATGCCATTTCCTATAACTCACAAGTGTGATGTTTATAGCTTTGGAATGTTGTTATTTGAAATCATAGGCAGGAGAAGGAACCTTGATGTTAAACTTACAGAGAGCCAAGAGTGGTTTCCTAGGCGGGTTTGGATAAAATTTGATAGGGGAGAACTAGGGGAGTTGACAAGAGACTGCGGGATAGAGGAGAAAGATAAGGAGAAGGCTGAAAGAATGGTTAGGATAGCTCTTTTGTGTGTTCAATATAGGCCTGAATCAAGACCCTTAATGAGTACAGTGGTGAAAATGTTAGAAGGTTCAGTGGAAATCCCAGAACCTTTAAACCCTTTTGGGCACCTGATGGATGGAAGTCACCCTGCTCATCCAATCCAAGCAACCCAGGACGATACCAGTCTTGGTTCTGACTCTACTCTGACTGCATCTGGATCTAGCATTGTTCGTGCTACTCCTATTATAAGTAAGTATGAGATTGAAATAGCCTCCACCCAAGATTAA	1224	0.4306	MPIAVLLPVKIYVAIMVYRRCTRRSSEPARPVSAVADTEFLTYTMDKFLQEMEREKPIRFTSHLLMLATNNYSCTLGSGGFGAVYKGSFSDGTTVAVKVLYGSSDKRIEEQFMAEVGTIGRVHHFNLVRLYGFCIERHMRALVYEYLDNGSLDKYLYHENKTLGFQKLHEIALGTARGIAYLHEECQQRIIHYDIKPGNILLDQNFCPKVADFGLAKFCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRRNLDVKLTESQEWFPRRVWIKFDRGELGELTRDCGIEEKDKEKAERMVRIALLCVQYRPESRPLMSTVVKMLEGSVEIPEPLNPFGHLMDGSHPAHPIQATQDDTSLGSDSTLTASGSSIVRATPIISKYEIEIASTQD	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g1408	407	Pfam	Protein tyrosine and serine/threonine kinase	74	340	IPR001245	GO:0004672\|GO:0006468
	Dere14g1408	407	ProSitePatterns	Protein kinases ATP-binding region signature.	76	98	IPR017441	GO:0005524
	Dere14g1408	407	MobiDBLite	consensus disorder prediction	366	380	-	-
	Dere14g1408	407	SMART	serkin_6	70	340	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere14g1408	407	FunFam	serine/threonine-protein kinase PBS1-like	42	146	-	-
	Dere14g1408	407	SUPERFAMILY	Protein kinase-like (PK-like)	51	341	IPR011009	-
	Dere14g1408	407	Gene3D	Transferase(Phosphotransferase) domain 1	147	347	-	-
	Dere14g1408	407	ProSiteProfiles	Protein kinase domain profile.	70	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere14g1408	407	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	190	202	IPR008271	GO:0004672\|GO:0006468
	Dere14g1408	407	MobiDBLite	consensus disorder prediction	356	380	-	-
	Dere14g1408	407	FunFam	PR5-like receptor kinase	147	348	-	-
	Dere14g1408	407	Gene3D	Phosphorylase Kinase; domain 1	44	146	-	-
	Dere14g1408	407	PANTHER	OS07G0415500 PROTEIN	47	352	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g1408	Dere-ChrDere14	14460829	14462052	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g1408	59	353	Receptor kinase-like Gene Family	AT5G38280	41.914	9.64e-77	249

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-Os	Dere14g1408		PK_Tyr_Ser-Thr	5e-47	CL0016