LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g1406	ATGAAATATATTCGGACCAACAGCTTCAAGAGGCTCTTCTCCTTCAAACGACGCAGTTTCGAGGATGGGCTTCCTTCTAGGGATGAGAAAGATGGGAGCTTGCAGATTCTTCCATTCCCTGAACAACCTTCTTACAGACCCACTTGGAAATGCTTCTCCTACGAGGAGCTCTTTGATGCCACCAATGGCTTCAGCTCAGAGAATCTGGTCGGGAAAGGAGGCTACGCTCAGGTTTACAAGGGGACATTGAGAGATGGAGGCGAGATTGCTGTGAAGAGGCTCACAAGAACTTCGAGCGATGAGAGGAAAGAGAAGGAGTTTTTGACAGAGATTGGTACTATCGGTCACGTTCACCATCCAAATGTATTGCCTCTTCTGGGTTGTTGTATTGACCAGGGGCTTTACCTCGTCTTCGAGCTTTCTTCCAAAGGCTCTGTTGCTTCTCTTCTTCATGATCAAAACTTGCCTCCTATGGACTGGAAAACCAGGCATGATATAGTTCTAGGGACTGCCCGTGGCCTCCATTACTTGCACAAAGGCTGCAAGAGGAGGATAATTCACAGGGACATCAAGTCATCAAACATTCTATTGACTGCAGATTTTGAACCACAGATATCAGATTTTGGACTAGCAAAATGGCTTCCAAATCAATGGACTCATCATTCAATAGCCCCAATAGAAGGCACATTTGGGCATTTGGCACCAGAGTACTACTTGCATGGAATAGTGGATGAGAAAACAGATGTGTTTGCGTTTGGGGTTTTCTTGCTTGAAGTCATCTCAGGGAGGAAACCGGTGGACGGCTCTCACCAAAGCTTACACAACTGGGCTAAACCATTATTGAACAAAGAGGAGATAGAAAAGCTGGTAGATCCAAGGCTGGAAGGGGCCTATGATGTAACACAATCAAAGAGACTTGCCTTTGCAGCCTCTCTCTGCATCCGAGCATCTTCAACGTGGCGACCTACCATGAGCCAGATTTTGGAGGTAATGGAGGAGGGAGAAATGGACAAGGAGAAATGGAAAATGCCAGAGGAAGAAGAAGAGCAAGAGGAGGAGTTCTGGGGTTTTGAGGATCTGGAATATGAGTATGAAAGTTCATTCTCTCTGTCTCTACCAGATTCCATTGGAAGCACTTAA	1140	0.4605	MKYIRTNSFKRLFSFKRRSFEDGLPSRDEKDGSLQILPFPEQPSYRPTWKCFSYEELFDATNGFSSENLVGKGGYAQVYKGTLRDGGEIAVKRLTRTSSDERKEKEFLTEIGTIGHVHHPNVLPLLGCCIDQGLYLVFELSSKGSVASLLHDQNLPPMDWKTRHDIVLGTARGLHYLHKGCKRRIIHRDIKSSNILLTADFEPQISDFGLAKWLPNQWTHHSIAPIEGTFGHLAPEYYLHGIVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHNWAKPLLNKEEIEKLVDPRLEGAYDVTQSKRLAFAASLCIRASSTWRPTMSQILEVMEEGEMDKEKWKMPEEEEEQEEEFWGFEDLEYEYESSFSLSLPDSIGST	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g1406	379	CDD	STKc_IRAK	70	333	-	-
	Dere14g1406	379	FunFam	Putative receptor-like serine/threonine-protein kinase	34	140	-	-
	Dere14g1406	379	PANTHER	OS08G0249100 PROTEIN	41	360	IPR046958	-
	Dere14g1406	379	SUPERFAMILY	Protein kinase-like (PK-like)	39	331	IPR011009	-
	Dere14g1406	379	Pfam	Protein kinase domain	66	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere14g1406	379	FunFam	Putative receptor-like serine/threonine-protein kinase	142	356	-	-
	Dere14g1406	379	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	185	197	IPR008271	GO:0004672\|GO:0006468
	Dere14g1406	379	Gene3D	Transferase(Phosphotransferase) domain 1	142	357	-	-
	Dere14g1406	379	ProSitePatterns	Protein kinases ATP-binding region signature.	70	92	IPR017441	GO:0005524
	Dere14g1406	379	Gene3D	Phosphorylase Kinase; domain 1	40	140	-	-
	Dere14g1406	379	SMART	serkin_6	64	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere14g1406	379	ProSiteProfiles	Protein kinase domain profile.	64	336	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g1406	Dere-ChrDere14	14432716	14436430	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g1406	52	332	Trihelix Transcription Factor Family	AT5G38560	45.361	9.41e-74	240

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Dere14g1406		PK_Tyr_Ser-Thr	1.9e-41	CL0016