Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1402 ATGGACTCTTCTTCCTCCTCCAACTCTACCCACAACTGGCTCGCTTTCTCTCTCTCCAACCCCTTATCTTCCTCCTCCTCCCACTTCCCCCTCTTCTCCTCCTTTACCTCTCCCTCCCCTACCCCCACTCTCTCTCTCACAGGTAACAGCACCGTCAACGCGTCGGCGGAGCCAAAGAATGGGGCGGTCGGTGGGGGACCGACTAATCTCTCTATGTTCACCGGGGGCCCTAAGTTTGAGGACTTCCTCGGTGGCGGTGGCGGTGGAGGTGGACCAGCGGCCCCGCCAGCAGCTGCAGCGCCACCGCAGTTCTCTGCAGACAACACGCTGAGCGCGGTGATGGAGAACGAGATATACGATTCAGAGCTGAAGACGATAGCGGCCAGCTTCCTTCGAGGCTTCGCCTCCGGAGGGCAAGCCGAGCCGCAGCAGAAACAGGCGCTGGCTCCGGCCGAGCCGTCCCCGAAGAAGAGCGTCGACACCTTCGGTCAACGCACCTCCATCTACCGCGGCGTCACACGGCATAGATGGACGGGAAGATACGAAGCTCATCTATGGGATAACAGCTGCAGAAGGGAAGGGCAAAGTAGGAAAGGAAGACAAGGTGGCTACGATAAGGAAGAGAAGGCAGCCAGAGCTTACGATCTCGCAGCTCTCAAGTACTGGGGTCCGACCACCACGACCAACTTTCCAATCTCAAACTACCAGAAGGAACTGGAAGAGATGAAGAACATGACGAGGCAGGAATTCGTGGCTTCTCTTAGAAGGAAGAGTAGTGGTTTCTCGAGAGGCGCCTCAATATATAGAGGAGTGACGAGACATCACCAGCATGGCCGATGGCAGGCAAGAATAGGCAGAGTCGCCGGAAACAAGGACCTCTACCTTGGCACTTTTAGCACTCAAGAGGAAGCTGCGGAGGCGTATGACATAGCAGCAATAAAGTTCAGAGGAATAAACGCAGTCACTAACTTTGACATGAGTCGCTACGACGTTAAGAGCATTGCGAATAGTAGCCTTCCCATTGGTGGATTATCCAGCAAGACCAAGAACTCCACGGATTCTTCTCTGTCGGATCATACCAAAAGCCTCGAGGGTGCTAGATCCGACGATCGGGATCTCTCTTCGGCTAATTCCTCGGTGACGTTTGCTTCCCAAGCACCACCTTCAAGCTCTAGCTCTCTTAGCTTCGCCATACCCATCAAACAGGACGCTTCAGATCATTACTGGTCCATTCTTGCTGGGTATAACAAAAATCCTTCGTTAGTCCAGTCGTCTTCCACCAACGGTTCTGTGACCTCTGTGTTACCCTTCAACGTGGACTTCTCTACACTCTCGAGTACGAGCAGTGAAGGAAATAACAATAATGCATTTTTCAGTGCAGGCATGTTTGTTCAACAACAAAGTTGTAATGGTGGTGGTGCTGGTTCTGGTTCTGGTTCTGGTTCGAGCTCGTTGATCCCGTTGGCCGCGCCCATTGCTTTAAATAGTAATAGTAGTTATGAGAGCTCTTCTGGTTATGGTAACTGCAGTATTGGACCTACCCTACACACCTTCCAGACCCATGCAAAACCCAGTCTCTTTCAAACCCCAATTTTTGGCATGGAATGA 1608 0.5255 MDSSSSSNSTHNWLAFSLSNPLSSSSSHFPLFSSFTSPSPTPTLSLTGNSTVNASAEPKNGAVGGGPTNLSMFTGGPKFEDFLGGGGGGGGPAAPPAAAAPPQFSADNTLSAVMENEIYDSELKTIAASFLRGFASGGQAEPQQKQALAPAEPSPKKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYQKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGINAVTNFDMSRYDVKSIANSSLPIGGLSSKTKNSTDSSLSDHTKSLEGARSDDRDLSSANSSVTFASQAPPSSSSSLSFAIPIKQDASDHYWSILAGYNKNPSLVQSSSTNGSVTSVLPFNVDFSTLSSTSSEGNNNNAFFSAGMFVQQQSCNGGGAGSGSGSGSSSLIPLAAPIALNSNSSYESSSGYGNCSIGPTLHTFQTHAKPSLFQTPIFGME 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1402 535 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Dere14g1402 535 PRINTS Ethylene responsive element binding protein signature 307 327 IPR001471 GO:0003700|GO:0006355
Dere14g1402 535 SMART rav1_2 267 331 IPR001471 GO:0003700|GO:0006355
Dere14g1402 535 SMART rav1_2 168 237 IPR001471 GO:0003700|GO:0006355
Dere14g1402 535 MobiDBLite consensus disorder prediction 342 392 - -
Dere14g1402 535 MobiDBLite consensus disorder prediction 21 57 - -
Dere14g1402 535 ProSiteProfiles AP2/ERF domain profile. 168 231 IPR001471 GO:0003700|GO:0006355
Dere14g1402 535 FunFam AP2-like ethylene-responsive transcription factor 266 327 - -
Dere14g1402 535 Pfam AP2 domain 267 317 IPR001471 GO:0003700|GO:0006355
Dere14g1402 535 Pfam AP2 domain 168 223 IPR001471 GO:0003700|GO:0006355
Dere14g1402 535 MobiDBLite consensus disorder prediction 21 68 - -
Dere14g1402 535 FunFam AP2-like ethylene-responsive transcription factor ANT 167 233 - -
Dere14g1402 535 SUPERFAMILY DNA-binding domain 167 233 IPR016177 GO:0003677
Dere14g1402 535 SUPERFAMILY DNA-binding domain 266 327 IPR016177 GO:0003677
Dere14g1402 535 ProSiteProfiles AP2/ERF domain profile. 267 325 IPR001471 GO:0003700|GO:0006355
Dere14g1402 535 MobiDBLite consensus disorder prediction 342 359 - -
Dere14g1402 535 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 129 413 - -
Dere14g1402 535 MobiDBLite consensus disorder prediction 137 161 - -
Dere14g1402 535 CDD AP2 266 327 IPR001471 GO:0003700|GO:0006355
Dere14g1402 535 MobiDBLite consensus disorder prediction 372 392 - -
Dere14g1402 535 CDD AP2 167 233 IPR001471 GO:0003700|GO:0006355
Dere14g1402 535 Gene3D AP2/ERF domain 267 327 IPR036955 GO:0003700|GO:0006355
Dere14g1402 535 Gene3D AP2/ERF domain 168 233 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1402 Dere-ChrDere14 14388507 14391459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1402 117 535 AP2-EREBP Transcription Factor Family AT5G57390 55.809 7.52e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere14g1402 AP2 1e-09 CL0081