Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1356 ATGGGAATCGAGAGGGGAAGCCTCAAGGGCTTTCGGAGTGGCGGCTGGAGCGTGCCGGCGAAGCTATGCGACTCGTGCAAATCGGCTGCGGCGGCGATTTTCTGCCGAGCCGACTCGGCTTTTCTCTGCATGCTCTGCGACAACAAAATCCACTGCGCCAACAAGCTGGCTTCGCGCCACGAGCGCGTGTGGATATGCGAGGTGTGTGAGCAAGCACCTGCCGCCGTCACGTGCAAGGCCGACGCTGCCGCCCTCTGCGTCACGTGCGATTCGGATATCCACTCCGCTAACCCGCTCGCCCGCCGCCACGAGCGGGTCCCCGTGGAGCCCTTCTTCGACTCTGCTGACTCCGTCGCGAAATCCGCCGCCGCTGCCTTTAACTTGCTAGTTCCAACCGATAACGTAATTGGATCCGACGGATTCCCCCATGAAGAATCCGAATCAGCATCGTGGTTAATTCCTGACCCGAATTTCAACCCGAAGATCATGGATGCTCCGGATATCAAACCCGGCGATATGTTCTTCCCGGAAATGGAATATCCATTCCTGGACTTCGATTACTCAAGTTCCTTCGATCTGAATAACAATAACAGCGCGGGTAATAACGATAGCGTAGTCCCAGTTCAAGCTCCGGTTATGAATCAGAAGGAGAGTTACTTCGATATCGATTTTTGCAGATCGAAGCTTTCTTCAATTAGCTATCCGACGCAGTCATTTAGTCGTCAAAGCATGTCATCGTCTTCGGTTGACGTTGGTGTGGTCCCAGACGGGGCGAACACGGTGTCGGACATGTCGTTCCCATTCGGCCGGAACATAAGCAACAGTTCCGAGTCGAGCGGAATTATGTCGGCGGGTAATACGAATAACCAACTGGGGAGTTCGTTGTGTGGTATGAACCGGGAAGCTCGTGTGTTGAGATACAGGGAGAAGAGGAAGAACCGGAAGTTCGAGAAAACTATCCGTTACGCTTCGCGAAAGGCTTATGCGGAAACCCGGCCGAGGATCAAGGGCCGGTTCGCAAAGCGGACCGAGATTGAGTCAGATTTGGACCGGCTATTTAGCCCCGTTAACCCCACCACAGATCTCTTGCTGGATTCTCAGTACGGCGTCGTCCCCTCGTTTTAA 1125 0.544 MGIERGSLKGFRSGGWSVPAKLCDSCKSAAAAIFCRADSAFLCMLCDNKIHCANKLASRHERVWICEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSADSVAKSAAAAFNLLVPTDNVIGSDGFPHEESESASWLIPDPNFNPKIMDAPDIKPGDMFFPEMEYPFLDFDYSSSFDLNNNNSAGNNDSVVPVQAPVMNQKESYFDIDFCRSKLSSISYPTQSFSRQSMSSSSVDVGVVPDGANTVSDMSFPFGRNISNSSESSGIMSAGNTNNQLGSSLCGMNREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIESDLDRLFSPVNPTTDLLLDSQYGVVPSF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1356 374 SMART bboxneu5 18 65 IPR000315 GO:0008270
Dere14g1356 374 SMART bboxneu5 66 108 IPR000315 GO:0008270
Dere14g1356 374 Pfam B-box zinc finger 20 62 IPR000315 GO:0008270
Dere14g1356 374 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Dere14g1356 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 23 354 IPR045281 GO:0009909
Dere14g1356 374 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Dere14g1356 374 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Dere14g1356 374 ProSiteProfiles CCT domain profile. 300 342 IPR010402 GO:0005515
Dere14g1356 374 CDD Bbox1_BBX-like 65 108 - -
Dere14g1356 374 CDD Bbox1_BBX-like 22 65 - -
Dere14g1356 374 Pfam CCT motif 300 342 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1356 Dere-ChrDere14 13889701 13890920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1356 1 374 C2C2-CO-like Transcription Factor Family AT5G57660 52.604 8.26e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dere14g1356 zf-B_box 8.3e-07 No_clan