Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1331 ATGGGCAGAAGCAGAAGCCTTCTAGAAGTGAAAGGAGAAGCCTTTTTGTCTCCCTCGCAACACCCATCGTACTTGGTTTCGCCGCCCAATGTTGGATCTGAAAATTTCAGTCTAAACGACAAGGTCAGTCCAAGCGTACTCCTTATCATCGTCATCCTCGCTGTTGTGTTCTTCGTCTCTGGTTTGCTTCACCTCCTCGTTCGATACCTATGGAGGCCCCGAACCAGAGACCCTGACGAATTGGACAATGTCACGGCGCTTCAGGGACAATTACAACAACTCTTCAACCTTCACGATTCTGGGGTCGACCAATCCTTCATCGACACCCTCCCGGTGTTCCACTACAAAGCCATCATCGGACTCAAGAACCCTTTCGATTGCGCCGTTTGTTTGTGCGAATTCGAACCAGAGGACAAGCTTCGATTGTTGCCCAAATGCAGCCACGCCTTTCACATGGAGTGTATCGACACGTGGCTCCTGTCCCACTCCACTTGCCCTCTCTGTCGAGCCAGCTTGCTCAATGATTTCTCCTCCAACAATAATCGTTCCCCCATTGTTCTTGTCCTGGAATCTGGGAGTGAGAGCTCCAGAGAGATTGTCCCAGAAACAGAGGAAGTTGGATCCGGGTCAACCCGGATGAATTTGGATCGAGAATCCGGTGAAGTGGTTACTGTGAAGCTGGGAAAGTTTAGGAATGTGGATAATAATGGCGAAGGTGCTAGTAATAGTAATGGTGAAACTAATAATAATGCAGATGGAAGAAGGTGTTTTTCTATGGGGTCGTTTGCTTATGTGTTGGACGAGAGTTCTTCGCTTCAGGTACCCATTAGAGCACAAATCAAGAAGAAGCGTGCTTTGCCTTTAACCCCAGGACACAGGCCTGCAATGTCGGAATGTGACTGTGAATCCAGAAGGGACTTCAGATTCTCTGGTTTTGAAGGGAACAGAGTGGAAAATACTTCCGGGGCTGCAATTCCAAGTTCTAGGATTATTACCAGGAAAGAGAGCTTTTCTGTGTCGAAGATTTGGCTTCAGGGAAAGAAAGAGAAGCCGAATGGGCTCGCGGATTCGTCGAGGAGGGCCGTCTCGTTTCGGTTTCCATTGCAGAGAAACGAGAATTTGAAGGGGAAGAATGGGAAATCTGACACGAGGAGTACGATTTCTGAGATGGATATTGAAAAGTGGGAAAATGGAGGAGGAAGTGAGTCTGGATATGATGAAGAAAACCAGAGCAGTTACAGTGTGGATTCGCAGGCCACGAGAGCGCCTTCTTTTGCAAGGAGGACTCTGCTTTGGCTCACGGGAAGGCAGAACAAGGTTGTTCATTCATCCTCTGGTTCCAACGACTTCTAG 1353 0.4834 MGRSRSLLEVKGEAFLSPSQHPSYLVSPPNVGSENFSLNDKVSPSVLLIIVILAVVFFVSGLLHLLVRYLWRPRTRDPDELDNVTALQGQLQQLFNLHDSGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLNDFSSNNNRSPIVLVLESGSESSREIVPETEEVGSGSTRMNLDRESGEVVTVKLGKFRNVDNNGEGASNSNGETNNNADGRRCFSMGSFAYVLDESSSLQVPIRAQIKKKRALPLTPGHRPAMSECDCESRRDFRFSGFEGNRVENTSGAAIPSSRIITRKESFSVSKIWLQGKKEKPNGLADSSRRAVSFRFPLQRNENLKGKNGKSDTRSTISEMDIEKWENGGGSESGYDEENQSSYSVDSQATRAPSFARRTLLWLTGRQNKVVHSSSGSNDF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1331 450 CDD RING-H2_EL5-like 126 169 - -
Dere14g1331 450 Pfam Ring finger domain 126 169 IPR001841 -
Dere14g1331 450 MobiDBLite consensus disorder prediction 375 391 - -
Dere14g1331 450 MobiDBLite consensus disorder prediction 403 422 - -
Dere14g1331 450 FunFam RING-H2 finger protein ATL46 89 174 - -
Dere14g1331 450 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Dere14g1331 450 MobiDBLite consensus disorder prediction 372 422 - -
Dere14g1331 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 176 IPR013083 -
Dere14g1331 450 SMART ring_2 127 168 IPR001841 -
Dere14g1331 450 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 39 343 - -
Dere14g1331 450 SUPERFAMILY RING/U-box 106 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1331 Dere-ChrDere14 13402071 13403423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1331 38 445 C3H Transcription Factor Family AT2G18650 47.630 5.05e-109 327