LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g1293	ATGACTGTGACGAAACTCACATGGAAATCGATCTTCCCCAGTTGTTATAAGGGTGAAAATCCCTCCGAAAAACCCAAGCAAGCGATGGCCAAAAGTTCTAGTACAAAGCAAGGTTCTTTGAACAGAATTTCTGTGTCGGATTTGAGTAATCCGAGCCTGACAATTACGGAGGATCTGTCGGTATCTCTTGCGGGATCTAATCTACATGTTTTCACATTGGCTGAGCTAAAGATTATCACACAGAGTTTCTCTTCCAGTAACTTTCTGGGTGAAGGGGGATTCGGACCTGTGCACAAGGGTTTCATCGATGACAAGCTTAGGCCTGGTCTCGAGCCTCAGCCTGTGGCTGTTAAGCTCTTGGACCTGGATGGCATGCAGGGCCATAGAGAGTGGTTGACGGAAGTTGTTTTTCTGGGGCAACTGAGACACCCTCACCTTGTGAAGCTCATCGGATTTTGCTGTGAAGAAGAACACAGGCTTCTGGTATATGAATATCTACCCAGAGGCAGCTTAGAGAATCAACTATTTAGAAGATACTCGGCATCACTAGCATGGTCAGCAAGAATGAAAATTGCTTTTGGTGCTGCAAAGGGTCTAGCCTTTCTTCATGAAGCAGAGAAACCAGTCATATATAGAGATTTCAAAGCTTCTAACATCTTATTAGACTCGGATTACAATGCAAAACTCTCAGATTTCGGGTTGGCCAAAGATGGTCCCGAAGGAGATGACACCCACGTCTCAACCAGAGTCATGGGCACACAAGGCTATGCTGCCCCAGAATACGTGATGACAGGTCACTTGACATCAATGAGTGATGTGTATAGCTTTGGAGTAGTGCTGTTGGAGATGCTGACAGGAAGAAGGTCAGTGGACAAAAGCAGGCCTGCAAGAGAGCAGAACTTAGTAGAATGGGCAAGGCCGATGTTGAATGATCCCAGAAAACTCGGGAGGATAATGGATCCCAGACTCGAAGGCCATTATTCTGAAACGGGGGCAAGAAAAGCTGCCTCTTTGGCTTATCAATGCCTCAGCCACAGGCCTAGAAGCAGGCCTTCTATGAGTACAGTGGTTAAGACTTTGGAGCCCCTCCAGCATTTTGATGATCTTCCTATTGGACCCTTCGTTTACACAGTCCCAAATGATCCTGAATTGCACAACGATTCAAAGGAATGTGAAGCACCCAAAGAAAGAAAGAAGGAAAACGGCCACCACCACCGCCACCACCGGAAGCACCATCTGTCCAATGGCCATAAGCCCAAGCCAGACGATCATGTACCCCAAAATGGTACTAACAGCGGGTCAAACTCACCACCTTCGCGTCGCAAGGGATCCGAAACTTAG	1341	0.4713	MTVTKLTWKSIFPSCYKGENPSEKPKQAMAKSSSTKQGSLNRISVSDLSNPSLTITEDLSVSLAGSNLHVFTLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRPGLEPQPVAVKLLDLDGMQGHREWLTEVVFLGQLRHPHLVKLIGFCCEEEHRLLVYEYLPRGSLENQLFRRYSASLAWSARMKIAFGAAKGLAFLHEAEKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTSMSDVYSFGVVLLEMLTGRRSVDKSRPAREQNLVEWARPMLNDPRKLGRIMDPRLEGHYSETGARKAASLAYQCLSHRPRSRPSMSTVVKTLEPLQHFDDLPIGPFVYTVPNDPELHNDSKECEAPKERKKENGHHHRHHRKHHLSNGHKPKPDDHVPQNGTNSGSNSPPSRRKGSET	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g1293	446	Gene3D	Phosphorylase Kinase; domain 1	43	165	-	-
	Dere14g1293	446	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	209	221	IPR008271	GO:0004672\|GO:0006468
	Dere14g1293	446	Pfam	Protein tyrosine and serine/threonine kinase	87	360	IPR001245	GO:0004672\|GO:0006468
	Dere14g1293	446	MobiDBLite	consensus disorder prediction	385	399	-	-
	Dere14g1293	446	MobiDBLite	consensus disorder prediction	400	415	-	-
	Dere14g1293	446	Gene3D	Transferase(Phosphotransferase) domain 1	166	369	-	-
	Dere14g1293	446	MobiDBLite	consensus disorder prediction	425	446	-	-
	Dere14g1293	446	FunFam	Serine/threonine-protein kinase BIK1	50	165	-	-
	Dere14g1293	446	PANTHER	OS01G0588500 PROTEIN-RELATED	37	364	-	-
	Dere14g1293	446	MobiDBLite	consensus disorder prediction	385	446	-	-
	Dere14g1293	446	MobiDBLite	consensus disorder prediction	19	38	-	-
	Dere14g1293	446	ProSiteProfiles	Protein kinase domain profile.	83	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere14g1293	446	FunFam	Probable serine/threonine-protein kinase PBL8	166	374	-	-
	Dere14g1293	446	SUPERFAMILY	Protein kinase-like (PK-like)	60	363	IPR011009	-
	Dere14g1293	446	CDD	STKc_IRAK	89	363	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g1293	Dere-ChrDere14	12985988	12987742	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g1293	69	399	Glycoside Hydrolase	AT3G07070	48.802	9.10e-102	308

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Dere14g1293		PK_Tyr_Ser-Thr	4.9e-46	CL0016