Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1273 ATGAGTCTTCAAGGTCCAGTCAATCACGAAACAAGATCCAGCAAGAAGCCAAAATTGGCGGGGAAAATGGAAGTTCCTCATGCGGTCGAGGTTGTGGACGTCGAAGCTTTTTGCTTCACACCCATTCCGAACAAGGGCACAAGCCAATCCAATGCAATTTCTGTTGAGCAGTACTCCCACGACATAGACCTCCACGTCGCGATCATGGCTTCTCTAGGTCAAACAAACCCTGCCCCGAAAACCCTCATCGACCTGTCTGACGACGACGATGATGACGATGTGAGAATTCTTAGGTTTAAACCTGAAAATACCCCTTTTGGGAAACGAAGAAAGTCCAGAAATCCCTTTGTTTCCACTTCTGAAACAGGGGAATCTTCCAATTCTCCTCCATTTGTATGCGAAATCTGTACTGAAACCAAGACTGCAAACGAGTCGTTTAGCATCAGTGGTTGCTCTCACGCTTATTGTAGCGAGTGTGTGATTATGTATGTGGGATCCAAGCTACAAGAAAATGTTGTTAACATTAGGTGTCCGGTGTCAGAGTGCAGAGGATTGTTAGAGCCTGAGGATTGCCGTGGAATTCTTCCTCCGGAAGTGTATGATAGGTGGGGTACTGCCTTCTGTGAGGCTGTAATTCTTGCAGAAGAAAAGTTTTACTGTCCATATAAGGATTGCTCTGCGCTATTGATTGATGATGGAGGAGAAGGGACTATCACAGAGTCACAATGTCCAAACTGTAGGAGACTCTTCTGCGTGCAGTGTAAGGTGCCTTGGCATTCGGGAATTGATTGCTCAGAGTTTCAGAAATTGAGCAAGGACGAAAGAGAGAACGAAGATATAATGCTGATGCAGCTTGCTCAAAACAACAAGTGGAGGAGGTGTCCTAAGTGCAGGTTCTACGTCGAGAAATCTTTTGGTTGTATGTATATGAAATGCAGGTGTGGAATTGCCTTCTGTTACAACTGTGGAACTGTTTCTAAACATAACGCCCATATTTGCTATAACTGTAGACGCTAA 1017 0.4494 MSLQGPVNHETRSSKKPKLAGKMEVPHAVEVVDVEAFCFTPIPNKGTSQSNAISVEQYSHDIDLHVAIMASLGQTNPAPKTLIDLSDDDDDDDVRILRFKPENTPFGKRRKSRNPFVSTSETGESSNSPPFVCEICTETKTANESFSISGCSHAYCSECVIMYVGSKLQENVVNIRCPVSECRGLLEPEDCRGILPPEVYDRWGTAFCEAVILAEEKFYCPYKDCSALLIDDGGEGTITESQCPNCRRLFCVQCKVPWHSGIDCSEFQKLSKDERENEDIMLMQLAQNNKWRRCPKCRFYVEKSFGCMYMKCRCGIAFCYNCGTVSKHNAHICYNCRR 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1273 338 CDD Rcat_RBR_unk 290 324 - -
Dere14g1273 338 FunFam RBR-type E3 ubiquitin transferase 266 338 - -
Dere14g1273 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 214 IPR013083 -
Dere14g1273 338 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 89 334 IPR031127 GO:0004842|GO:0016567
Dere14g1273 338 SMART ibrneu5 201 264 IPR002867 GO:0008270
Dere14g1273 338 SMART ibrneu5 274 333 IPR002867 GO:0008270
Dere14g1273 338 SUPERFAMILY RING/U-box 128 210 - -
Dere14g1273 338 ProSitePatterns Zinc finger RING-type signature. 151 160 IPR017907 -
Dere14g1273 338 Gene3D - 261 338 - -
Dere14g1273 338 MobiDBLite consensus disorder prediction 1 21 - -
Dere14g1273 338 FunFam RBR-type E3 ubiquitin transferase 128 214 - -
Dere14g1273 338 ProSiteProfiles TRIAD supradomain profile. 129 338 IPR044066 -
Dere14g1273 338 SUPERFAMILY RING/U-box 208 269 - -
Dere14g1273 338 Pfam IBR domain, a half RING-finger domain 212 264 IPR002867 GO:0008270
Dere14g1273 338 CDD BRcat_RBR_unk 216 267 - -
Dere14g1273 338 SUPERFAMILY RING/U-box 275 337 - -
Dere14g1273 338 MobiDBLite consensus disorder prediction 105 127 - -
Dere14g1273 338 ProSiteProfiles Zinc finger RING-type profile. 133 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1273 Dere-ChrDere14 12719193 12720983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1273 133 324 C3H Transcription Factor Family AT2G19610 29.353 2.41e-22 95.1