Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1268 ATGCATCTTTCTTCAACAAAAGGCATGTCGCCAGCACCCACTATCACATTCATCTTCTTGTCTATTCTACTTCTGGGTGTGTACACCCCTGTTGCGGTTGGTGCTGGAGTTGGGGACGACGTGTTGGGTTCAGAGTGCTTGAAGGTTTCCACTTCTCAATTCGTGGGCTCTGTGAGAGCAATCATCGATGTGTTGCAGCAGGTTATCTCCCTTCTGTCACGATTCGGTGATATATCTGGAGATTCTCACATTTCAAATGCAGTTTCCGACTGCCTCGACTTGCTCGACATGTCTTCCGACGATCTCACTTGGTCTGCATCTGCTTCTCAAACTCCCAGAGGCAAGCATAACAGTACTGGAAACTTAAGCTCTGATTTGAGGACATGGTTAAGCGCGGCATTAGCTAATCCAGAGACATGCATAGACGGATTCGAAGGTACCAACAGCATTGTGAGAGGTCTAATATCAACTGGGCTCGGAGAAGCGACCTCATTGGTGAAACAGCTACTGACCAAGGTGCAGCCAGCTGCTCCGGATCGATTCTGGAGCCGTAAGAGCCGATTCCCTTCGTGGCTTAAACCAGGGATCCGCAAGCTGCTGCAAGCAAATGGGGTGGCCGTAGATGCTGTGGTCGCCGCCGATGGGACTGGAAACTACATGAATGTGATGGACGCAGTGCTTGCGGCTCCCGACTGCAGCATGAAGCGCTATGTGATATACGTGAAGAGGGGTGTGTACACTGAGAACGTGGAGATCAAGAAGAAGAAGTGGAACCTCATGATGATCGGCGACGGTATGGACGCCACCATTATCTCCGGTAACCGCAGTTTCGTCGATGGCTGGACCACCTTCCGGTCCGCCACATTTGCTGTTAGTGGGAGAGGGTTCATAGCACGAGACATTACCTTCCAGAACACTGCAGGACCCGAGAAGCACCAAGCAGTAGCCCTGAGATCCGACTCCGACCTCTCTGTCTTCTTCCGATGTGGGATTTACGGATACCAAGACAGCCTCTACACTCACACCATGCGTCAGTTCTACAGAGAATGCAAAATCTCCGGCACCGTGGACTTCATCTTCGGCGATGCCACTGCTGTGTTCCAAAACTGCCTTCTCATGGCGAAGAAAGGCCTGCCAAATCAGAAGAACACCATCACAGCTCAAGGACGAAAGGACCCAAATGAACCAACGGGCTTCTCCTTCCAGTTCTGCAACGTTTCTGCAGATTCAGACCTCCTTCCCTCTGTTAACTCCACCCAAACGTACCTTGGACGACCATGGAAGATGTATTCACGTACAGTTTTCATGCAGTCGTACATGAGTGAGGTGTTGAGGCCGGAAGGGTGGCTAGAGTGGAACGGAGATTTTGCACTGGACACGTTGTACTATGCTGAGTACATGAATTATGGAGCTGGTGCGGCAGTAGACAAGCGAGTGAAATGGAGTGGGTATCAAGCATTGAACGATTCAAGCCAGGCTAGTAATTTCACTGTGGCACAATTTATTGACGGCAATCTGTGGTTACCTTCTACTGGTGTAACGTACACTGCGGGACTGGGGGTTTGA 1566 0.5064 MHLSSTKGMSPAPTITFIFLSILLLGVYTPVAVGAGVGDDVLGSECLKVSTSQFVGSVRAIIDVLQQVISLLSRFGDISGDSHISNAVSDCLDLLDMSSDDLTWSASASQTPRGKHNSTGNLSSDLRTWLSAALANPETCIDGFEGTNSIVRGLISTGLGEATSLVKQLLTKVQPAAPDRFWSRKSRFPSWLKPGIRKLLQANGVAVDAVVAADGTGNYMNVMDAVLAAPDCSMKRYVIYVKRGVYTENVEIKKKKWNLMMIGDGMDATIISGNRSFVDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFFRCGIYGYQDSLYTHTMRQFYRECKISGTVDFIFGDATAVFQNCLLMAKKGLPNQKNTITAQGRKDPNEPTGFSFQFCNVSADSDLLPSVNSTQTYLGRPWKMYSRTVFMQSYMSEVLRPEGWLEWNGDFALDTLYYAEYMNYGAGAAVDKRVKWSGYQALNDSSQASNFTVAQFIDGNLWLPSTGVTYTAGLGV 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1268 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 174 IPR035513 -
Dere14g1268 521 Pfam Pectinesterase 208 505 IPR000070 GO:0030599|GO:0042545
Dere14g1268 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 157 IPR035513 -
Dere14g1268 521 CDD PMEI-like_4 14 175 - -
Dere14g1268 521 Gene3D - 203 519 IPR012334 -
Dere14g1268 521 PANTHER PECTINESTERASE 64 509 - -
Dere14g1268 521 Pfam Plant invertase/pectin methylesterase inhibitor 65 157 IPR006501 GO:0004857
Dere14g1268 521 SUPERFAMILY Pectin lyase-like 205 518 IPR011050 -
Dere14g1268 521 SMART PMEI_2 37 176 IPR006501 GO:0004857
Dere14g1268 521 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Dere14g1268 521 FunFam Pectinesterase 202 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1268 Dere-ChrDere14 12678853 12682543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1268 14 519 Carbohydrate Esterase AT3G43270 62.235 0.0 696