Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1262 ATGGGTTTCTGTGTTGAGGAGTCAATCTCAGGTTTGACAATAGGTCAAGCAATATATGAGGCAGCTCTAATAATTGCAATTCTGAGATGGGTGTTTTGCTGGGTTTCCAGGGTTATCAAAGATAGGAGGAGCCACTCTCCTCAGACCCCAACAGAACACTCTTCTTCTTCTTCTTCTTCATGGGTGTGTTCCCAGATGATAAGAGATAGTACTCTGACATTGAGAACCTTCGGTGAAATGGTGGAAAGAGTGCCAGAAACACAAGACACTTGTGCTGTGTGCTTGAACCAGTTAACAATGGAGGATGAGGTTAGAGAGCTCATATATTGTGACCATGTATTTCACAGAGAATGCATAGACAGATGGCTGGATCATGATCGTGACAATCACAGCCCCACTTGCCCATTATGCAGAGCCCCTTTGCTCACTTCCTATTGCTCATCAGATTCAGAAAGCTCCAGCTGTATGCCACCCTCTCACCCTAGCTGGGCTGTGGAGAGGCTTCTCTATCTCTTTGGGGAGGATCTGCAACTTTGTTAG 540 0.4574 MGFCVEESISGLTIGQAIYEAALIIAILRWVFCWVSRVIKDRRSHSPQTPTEHSSSSSSSWVCSQMIRDSTLTLRTFGEMVERVPETQDTCAVCLNQLTMEDEVRELIYCDHVFHRECIDRWLDHDRDNHSPTCPLCRAPLLTSYCSSDSESSSCMPPSHPSWAVERLLYLFGEDLQLC 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1262 179 ProSiteProfiles Zinc finger RING-type profile. 91 138 IPR001841 -
Dere14g1262 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 144 IPR013083 -
Dere14g1262 179 PANTHER RING ZINC FINGER PROTEIN-RELATED 28 176 - -
Dere14g1262 179 SUPERFAMILY RING/U-box 90 144 - -
Dere14g1262 179 SMART ring_2 91 137 IPR001841 -
Dere14g1262 179 Pfam Ring finger domain 89 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1262 Dere-ChrDere14 12604818 12605357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1262 1 178 C3H Transcription Factor Family AT5G20885 43.684 4.49e-40 132