Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1218 ATGGCGTACGTTACTCAACTCCCCTGCGACTGTGACGGAGTATGTATGATCTGCAAGACGAAGCCGGCGGAGGAAGAGAAGTTGACGTGCAAAACATGTGTTGCCCCATGGCATGTCGGCTGTCTCTCTAACCCTCTGGCAACGATGGCCGAGACACTTCAGTGGGTATGCCCCGATTGCTCTACCCCACCCTCCGATCTTCCTCCTGTGGCCATCGGCCAGGCCTTGCTCGACGGAGCTGGCGAATTGATGGCTGCAATGCGAGCGATTGAGGCTGATGCTTCTCTAACGCAGCTGGAGAAGGACAAGAAACGTCAGAAGCTCATGAGCGGAAAGGCTGGGTCGGAGGAAGACGAGGATGGGGTGAAGAAGGTAGAAGACGAAGGGAAGGACGTGTTGGATATTCTTAGTGGGACTCTCAACTGCTCCTTCTGTATGCAGCTTCCCGAGAGGCCCGTGACGACTCCGTGTGGCCACAATTTCTGCCTAAAATGCTTTCAGAAATGGATTGGACAAGGAAAACAAACATGTGCAAAGTGTCGTAGCACAATCCCTTCCAAAATGGCAAGCCAGCCACGTATCAATTCTGCACTTGTTATTGCCATTCGTATGGCAAAAGTATCCAAAAATGTTGCTGCGGGAGGAAATTCTAAAGTTTACCATTTTGTACACAACCAAGATAGACCAGACAAGGCATATACTACAGAGCGTGCTCAGAGGAAAGGCAAATCAAATGCAGCAAGTGGAAAGATTTTTGTAACTGTACCTCAAGATCATTTTGGTCCAATCCCAGCTGGCAATGATCCAGTGAGGAATCAAGGTGTGCTGGTTGGCGAATGTTGGGAAGATAGGCTAGAATGCCGGCAATGGGGTGCTCACTTCCCACATGTTAGTGGTATTGCTGGACAGTCAAACTATGGTGCACAATCAGTAGTTCTTTCAGGTGGTTATGTTGATGATGAAGATCATGGAGAATATTTTCTTTATACAGGAAGTGGCGGTAGAGACCTAAGTGGAAATAAGCGGACAAATAATACACAATCCTTTGATCAAAAATTTGAGAAGTTCAATTTAGCCCTCAAAGTTAGCTGTCTAAAAGGGTATCCAGTTCGAGTTGTAAGATCTCACAAAGAGAAGCGCTCCTCATATGCCCCTGAGAAAGGACTACGTTATGATGGTGTCTACAGAATTGAAAAGTGTTGGCAGAAACTAGGATTGCAGGGCTTCAAAGTTTGCCGGTATTTATTTGTTAGATGTGACAATGAACCTGCTCCTTGGACAAGTGATGATCATGGCGATCGCCCCAGACCATTGCCAGTAATTTCTGAGTTGGAAAAGGCTATAGGCTTAATTGAAAGGAAGGAGAGTCCATCATGGGATTTTAATGAAGAAGAATCTTGTTGGAAGTGGAAGAAACCACCACCTCCCAGCCAAAGGCACGTAAAAAGCATGGATCCCAAAGAGATAAAAAAGTCAAGGAGAGAAATAAGGAAAGTCCAAAATATGTCAATTAGGGAAAGATTGCTGAAAGGATTCGGTTGCCTTATTTGCAGTCAGGTTATGGTTTCTCCAGTGACGACACCCTGTGCTCATAATTTCTGCAAGTCTTGTTTGGAAGGTGCATTTGCAGGTCAGGCTTTTGTGAGAGACAGAAGCAGGGGTGGAAGATCACTTCGCACCCAAAAGAATGCCATGAAATGCCCTTCTTGCCCTACTGACATCTCTGATTTTCTCCAGAACCTTCAAATTAATACAGAGTTGATGGGTGTAATTGAGTCACTGAAAGCCGAGGCTGAAGAAAATGGGGATCTGGTGGAGTTAAGTGAGGATGTAGATGCAGCAGAGGTAGACTTTGATGATACTGGTGCAACGGATGAAGATAAGGAAACCTCACTTGAGAAGCTTAACGATTCGCCTGGGGAATCCGATGCCAAAAAACTGCAGTCGGGAGAACTTGGAGTGACCAAGGAGGAGCCAGATCCTGTGGCCAAGTGCAATGGTAAAAGAAAGAGATGA 2016 0.4618 MAYVTQLPCDCDGVCMICKTKPAEEEKLTCKTCVAPWHVGCLSNPLATMAETLQWVCPDCSTPPSDLPPVAIGQALLDGAGELMAAMRAIEADASLTQLEKDKKRQKLMSGKAGSEEDEDGVKKVEDEGKDVLDILSGTLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKQTCAKCRSTIPSKMASQPRINSALVIAIRMAKVSKNVAAGGNSKVYHFVHNQDRPDKAYTTERAQRKGKSNAASGKIFVTVPQDHFGPIPAGNDPVRNQGVLVGECWEDRLECRQWGAHFPHVSGIAGQSNYGAQSVVLSGGYVDDEDHGEYFLYTGSGGRDLSGNKRTNNTQSFDQKFEKFNLALKVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWQKLGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPVISELEKAIGLIERKESPSWDFNEEESCWKWKKPPPPSQRHVKSMDPKEIKKSRREIRKVQNMSIRERLLKGFGCLICSQVMVSPVTTPCAHNFCKSCLEGAFAGQAFVRDRSRGGRSLRTQKNAMKCPSCPTDISDFLQNLQINTELMGVIESLKAEAEENGDLVELSEDVDAAEVDFDDTGATDEDKETSLEKLNDSPGESDAKKLQSGELGVTKEEPDPVAKCNGKRKR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1218 671 MobiDBLite consensus disorder prediction 650 665 - -
Dere14g1218 671 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 89 209 - -
Dere14g1218 671 Pfam SAD/SRA domain 272 421 IPR003105 -
Dere14g1218 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Dere14g1218 671 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 4 601 IPR045134 -
Dere14g1218 671 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
Dere14g1218 671 Pfam RING-type zinc-finger 514 568 IPR027370 -
Dere14g1218 671 SUPERFAMILY FYVE/PHD zinc finger 7 66 IPR011011 -
Dere14g1218 671 MobiDBLite consensus disorder prediction 103 124 - -
Dere14g1218 671 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Dere14g1218 671 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Dere14g1218 671 SMART ring_2 514 570 IPR001841 -
Dere14g1218 671 SMART ring_2 142 180 IPR001841 -
Dere14g1218 671 SMART ring_2 15 60 IPR001841 -
Dere14g1218 671 SMART PHD_3 14 61 IPR001965 -
Dere14g1218 671 SUPERFAMILY PUA domain-like 245 440 IPR015947 -
Dere14g1218 671 SMART G9a_1 265 422 IPR003105 -
Dere14g1218 671 CDD RING-HC_ORTHRUS_rpt1 140 185 IPR047498 -
Dere14g1218 671 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 241 436 - -
Dere14g1218 671 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Dere14g1218 671 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Dere14g1218 671 MobiDBLite consensus disorder prediction 603 624 - -
Dere14g1218 671 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Dere14g1218 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 491 613 IPR013083 -
Dere14g1218 671 MobiDBLite consensus disorder prediction 601 671 - -
Dere14g1218 671 SUPERFAMILY RING/U-box 508 596 - -
Dere14g1218 671 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Dere14g1218 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 207 IPR013083 -
Dere14g1218 671 MobiDBLite consensus disorder prediction 625 641 - -
Dere14g1218 671 SUPERFAMILY RING/U-box 134 188 - -
Dere14g1218 671 Gene3D - 241 439 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1218 Dere-ChrDere14 12031518 12035905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1218 1 600 C2H2 Transcription Factor Family AT5G39550 62.149 0.0 753