LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g1217	ATGGATGTAAAAGGAAGAGGAAGCAACTCCACCACTCTCCAAAACGACGTCGCCGACGACCTTGACCTCCGACGAGGCCCCTGGACCGTCGACGAGGACCTCACCCTCATCAATCACATTGCCACTCACGGCGAAGGTCGCTGGAACTCCCTTGCTCGCTCCGCCGGCCTCAAGCGTACTGGTAAGAGCTGCAGATTGAGGTGGCTCAACTATCTTCGTCCCGATGTTCGACGTGGAAATATCACACTTGAAGAACAGCTTCTAATTCTCGAGCTCCATTCTCGCTGGGGAAACAGATGGTCCAAAATTGCCCAGTATTTGCCGGGAAGAACCGACAATGAGATCAAGAACTACTGGAGAACCCGTGTCCAAAAGCATGCGAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCCAGGCTGGTAGAACGCATTCAAGCCGCCGCCGCTGCCACCGCCACCACAACGGCGAATTCTCAATCATTATCCACCACCACAACCGTCACCGCAGATACCACATACAATCACTACAACAACAACAATCTTTATAATAACATGGAGGTCGAGAATGGGAACATGTTGTTAGCACCAGCAGTTATGAACAATAATGACTTTGGAGGTTCACAGGTCACGCAGAGTTACACGCCGGAGAATAGCAGCACAGGTGCTTCATCGGACTCGTTTGGGACACAGGTTTCGCCGGCGTCGGAATTGACTGATTATTACAGTACTGTCCCAAATATTAGCTGTTGTAACAATAACTCGAACCAGGATTACTATCAACCCTCTCAGATTAGCTACTCCGACTGCATCACCAGCCCATCTGGGTTATTCCCTCAAGGATTGGATTATTCCCAAGTCATTGAGCCAAACAACCCGTGGATTAACGGTGGGGACACGCTGGACAATTTGTGGAATGTCGAAAACATGTTGTTTTTACAGCAGCAGCTCAATATTGACAGCATGTAA	999	0.4925	MDVKGRGSNSTTLQNDVADDLDLRRGPWTVDEDLTLINHIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAAATATTTANSQSLSTTTTVTADTTYNHYNNNNLYNNMEVENGNMLLAPAVMNNNDFGGSQVTQSYTPENSSTGASSDSFGTQVSPASELTDYYSTVPNISCCNNNSNQDYYQPSQISYSDCITSPSGLFPQGLDYSQVIEPNNPWINGGDTLDNLWNVENMLFLQQQLNIDSM	332

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g1217	332	FunFam	MYB transcription factor	82	145	-	-
	Dere14g1217	332	Gene3D	-	22	78	-	-
	Dere14g1217	332	CDD	SANT	98	121	IPR001005	-
	Dere14g1217	332	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	22	201	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Dere14g1217	332	Pfam	Myb-like DNA-binding domain	78	121	IPR001005	-
	Dere14g1217	332	Pfam	Myb-like DNA-binding domain	25	72	IPR001005	-
	Dere14g1217	332	CDD	SANT	27	72	IPR001005	-
	Dere14g1217	332	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	20	72	IPR017930	-
	Dere14g1217	332	SUPERFAMILY	Homeodomain-like	22	119	IPR009057	-
	Dere14g1217	332	ProSiteProfiles	Myb-like domain profile.	20	72	IPR001005	-
	Dere14g1217	332	SMART	sant	77	125	IPR001005	-
	Dere14g1217	332	SMART	sant	24	74	IPR001005	-
	Dere14g1217	332	ProSiteProfiles	Myb-like domain profile.	73	123	IPR001005	-
	Dere14g1217	332	Gene3D	-	82	145	-	-
	Dere14g1217	332	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	73	127	IPR017930	-
	Dere14g1217	332	FunFam	Myb transcription factor	25	77	-	-
	Dere14g1217	332	MobiDBLite	consensus disorder prediction	217	242	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g1217	Dere-ChrDere14	12016034	12017710	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g1217	1	323	MYB Transcription Factor Family	AT3G06490	53.353	4.64e-92	276

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere14g1217		Myb_DNA-binding	1.9e-14	CL0123