LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g1206	ATGCTTAGCAGACATCATGTGACATTTGACTATCAATCAAGTGTTCTGAGATTCCTAGCAGGCTTTAAATGCCACCCCACTTTAGACAGACACCAATTACGGCACGTTTCGAGTTTAAGAAGAACAGGAAAGAGTTGCAGATTAAGATGGTTAAATTATCTAAAACCAGACATAAAGCGAGGAAATTTAACCCCAGAAGAGCAGCTTCTGATTATTGAACTCCACTCTAGGTGGGGCAACAGATGGTCAAAGATTGCACAAAATTTGCCAGGAAGGACAGACAACGAGATCAAGAACTATTGGAGAACTCAGGTTCAGAAACATGCCAGACAAATGAAAATTGACACAGATAGCACTGAGTTTCGAGAATTCGTTAGGCGTTTTTGGATGCCAAGATTGCTTCAGAGAGCAAAGGCATCGTCTTCTTCACCCATGTTACTTCAACACCAATCATTTCCTTTGCCTCTGAACACTGTTATTTCTCAGGATTCAACCATTGAAACAACACCAACACCAACGCATACTGTTTGGCAGGGAACTTGTATGATTGAAGCATATCTCAATTGTTCGTATCAGAATGAGCAAAACTCAGACTCAGAGCACAACAACAGTTCATACAATTCGTCTTCAGAATCAGCAAATATCCCTTTGGGATGCAATATCAGTACTAATAAAGTTCAAGGCTTGAATAATAGTGACTTGAGCACCTCTGCATATGGTGACTCCTTTGGGAATAACAATGGCTGTGAGATGGAAACCTTCAATCTGGAAGCCACAAGAGAAGTTGGTGATTGCCAAGTGGCGGAAAGCAACTGGGTAGACAATGATTTCGCTAGTAACATGTGGAGCATGGATGAACTATGGCAACTCTCACTCCAAGGAAGCGGATTTCTCTGGGGCTTGCATCGTCTTGAGCTGAGAGCTGTGAAGATGTACACATCAAGGAAGAAAATCCACAAAGATAATGATGCTGAGCCAACTGAGTTTGAAGAGTCTGTTGGACAGGCACTATTTGATCTAGAAAATACCAACCAGGAGCTGAAAAGTGATCTGAAAGATCTGTACGTAAATTCAGCAGTCCAAATTGATGTGTCTGGGAACCGTAAGGCTGTGGTTATCCATGTCCCATATAGACTGAGGAAAGCTTTCAGAAAGATTCATGTTAGGCTTGTCAGAGAGCTTGAGAAGAAATTCAGTGGGAAAGATGTAATTTTGATTGCAACCCGGAGGATATTGAGGCCTCCAAAGAAAGGATCTGCTGTTCAGCGTCCTCGAAGCCGTACACTTACTGCTGTTCATGAAGCTATGCTGGAGGATGTTGTATTGCCTGCTGAGATTGTTGGGAAGCGTATTAGGTACCGAGTTGATGGATCCAAGATTATGAAGGTTTTCTTGGACCCAAAGGAGCGAAACAACACTGAGTACAAGTTGGACACTTTTGCTGCAGTATACAGGAAGCTGTCAGGGAAAGATGTTGTGTTTGAGTATCCTATTACAGAGGCTTAA	1506	0.4236	MLSRHHVTFDYQSSVLRFLAGFKCHPTLDRHQLRHVSSLRRTGKSCRLRWLNYLKPDIKRGNLTPEEQLLIIELHSRWGNRWSKIAQNLPGRTDNEIKNYWRTQVQKHARQMKIDTDSTEFREFVRRFWMPRLLQRAKASSSSPMLLQHQSFPLPLNTVISQDSTIETTPTPTHTVWQGTCMIEAYLNCSYQNEQNSDSEHNNSSYNSSSESANIPLGCNISTNKVQGLNNSDLSTSAYGDSFGNNNGCEMETFNLEATREVGDCQVAESNWVDNDFASNMWSMDELWQLSLQGSGFLWGLHRLELRAVKMYTSRKKIHKDNDAEPTEFEESVGQALFDLENTNQELKSDLKDLYVNSAVQIDVSGNRKAVVIHVPYRLRKAFRKIHVRLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTAVHEAMLEDVVLPAEIVGKRIRYRVDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFEYPITEA	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g1206	501	SMART	sant	59	107	IPR001005	-
	Dere14g1206	501	Pfam	Ribosomal protein S7e	317	496	IPR000554	GO:0003735\|GO:0005840\|GO:0006412
	Dere14g1206	501	Pfam	Myb-like DNA-binding domain	60	103	IPR001005	-
	Dere14g1206	501	Gene3D	-	63	105	-	-
	Dere14g1206	501	Gene3D	-	20	59	-	-
	Dere14g1206	501	ProSiteProfiles	Myb-like domain profile.	55	105	IPR001005	-
	Dere14g1206	501	PANTHER	40S RIBOSOMAL PROTEIN S7	311	500	IPR000554	GO:0003735\|GO:0005840\|GO:0006412
	Dere14g1206	501	CDD	SANT	64	103	IPR001005	-
	Dere14g1206	501	SUPERFAMILY	Homeodomain-like	40	114	IPR009057	-
	Dere14g1206	501	Coils	Coil	337	357	-	-
	Dere14g1206	501	ProSitePatterns	Ribosomal protein S7e signature.	389	402	IPR000554	GO:0003735\|GO:0005840\|GO:0006412
	Dere14g1206	501	FunFam	MYB transcription factor	63	105	-	-
	Dere14g1206	501	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	55	109	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g1206	Dere-ChrDere14	11891327	11897414	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g1206	311	501	Cytoplasmic Ribosomal Protein Gene Family	AT3G02560	79.581	3.87e-111	325

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Dere14g1206		Ribosomal_S7e	1.2e-79	CL0652