Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1202 ATGGCGACGCCGTTAACGGGACTGCAGCACTTGGACGTAGGGGGAGGAGTGGCGGTGCTTTCAAATTCTGTGAACAAGGTCGATTCTTCCTCGTCTTCGCCCTCAGCCTCCAATGGTGGCTTGAACTGCTCTAAATTGGAGTCGCCAATTTTGATTTTCTTGTTCTTTCATAAAGCGATTCGAAATGAGCTTGATGCTCTTCACCGATTAGCTATGGCATTTGCCACGGGAAATCGCTCTGATATTCAGCCGCTCTTCGAACGCTATCATTTCCTCAGATCCATTTATAGACACCACTCCAATGCTGAAGATGAGGTGATTTTCCCTGCTCTTGATATACGTGTGAAGAATGTGGCGCAGACGTATTCTCTTGAACACAAGGGCGAAAGCAATCTCTTTGATCATCTATTTGAGCTGTTAAATTCTACCATCCAGAATGATGAAAGTTTCTCAAAGGAGTTAGCATCCTGCACGGGAGCTTTGCAGACATCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTATTTCCACTGCTTATTGAGAAATTCTCACTAGGGGAACAGGCATCTCTGGTTTGGCAGTTTCTGTGCAGTATTCCTGTCAATACAATGGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCACCTGATGAGTCTGAGGATCTGCAGAAGTGCTTAAGCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACTTGGATGGAAGGTAGAAGTGGTGCTAACACAGTTGAAAGTTGTGTAGATAATTCTCAGGTTCAATGTAGTCCTAGCCCATTAGCCCATCCAATTGGGAAAGTAAACTGTGCATGTGAGTCTGCAACAACTGGGAAAAGGAAATATTCTGAATCTATTCTAGATGTTTCTGATACCAATGGAACACATCCTATAGATGAAATAGTGCTCTGGCATAATGCGATAAAAAAAGAGTTAAGAGAGATAGCGGTGGAGACCAGAAAAATACAACTTTCTGGAGATTTTACTAATTTATCAGCGTTTAATGAAAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATATTTCCAGCCGTAGATGGAGAACTTTCTTTCTTACAGGAGCATGCTGAAGAAGAAAGTCAATTCAATGACTTCCGGTGTTTGATTGAAGGTATTCAAAGTGAAGGAGCAACATCCAATTCAGAAGCTGAATTTTATTCCAAGTTATGCTCACATGCTGATCATATAATGGAAACCATAAAGAGGCATTTCTGCAGTGAAGAAGTTCAGGTTCTTCCGCTTGCTCGGAAGCACTTCAGTTTCAAAAAACAACGTGAACTATTGTATCAAAGCCTGTGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTAGTAGGATCATTAACTGATGATGAAGCAAAGATGTTTTTGAACAACATGCAACTAGCAGCTCCCAAAACAGATACTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGCTCGTAAGGAGGGTCTGTGCTTGTCTTCAAGTGCATCAGGTTGCTGCCCTGCTAAAAAACTTGCTGATATTGAAGAAAATTGTGTTCAATCATCCTGTGCTAGTGCTTCTGCTTCTTCTTTATCTGCTAGTGGTTGCTCTGTGTCAGCTGAATCAGATGAGAACAAAAGACCAGTCAAGCGAAATACATTGGAGTTTTGCAAGAATGGAGATGTCCCTGAAACTTCAGAGACTGACAGCATGCAAAAACAATGTTGTAGTGCTCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAGTAGTAGTAATCTGGGGCTGAGATCTCTTTCTACCAAGTCCTTGCGCTCCTTGTCTTTCAGCTCTTCCCCCCCATCTCTTAATTCCAGTCTTTTCATATGGGAAACAGATAACAGCTCATGTGACACTGGCTCTGCAGAAAGACCAATTGATACTATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTAGTGATGGTGATGAGACAATTCTTCGTCAATTTACTGGAAGATTTCGTCTTTTATGGGGTTTATATAGGGCTCACAGTAATGCTGAAGATGATATAGTATTCCCAGCATTGGAATCCAAAGAGGCACTTCATAACGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAAAAATTGTTTGAGGATATATCCTGTGCTCTTTCTGAGCTTTCTGTACTTAATGAAAGTTTGCTGATAAGCAATATGTCAGAGGACACAAGTGAAAGTAATTTTGAAACTTCTGATGCCAGTGTTAATGATAATATCAGAAAGTATAATGAGCTAGCAACTAAACTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGAGAAGAGCGTGAGCTCTGGCCATTGTTTGGTAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACTGGTGCTGAAGTCCTCCAGTCAATGTTACCATGGGTAACTTCTGCACTGACTCAGGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCTACTAAGAACACCATGTTCAACGAATGGCTTAATGAATGCTGGAAAAAGAGTCCATCATCTGACTCACTGACTGAAACATCAGAGCATAGCCCTTCCCAAAGAGGTACTGAATATCAAGAAAGCTTGGACCTGAATGATCAGATTTTTAAGCCAGGTTGGAAAGATATATTTCGGATGAATCAGAATGAGCTTGAGTCAGAGATACGGAAGGTTTATCGGGATTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAACCTAATGACTAGTCGCTGGATTGCTTCCCAGCAGAAGTTACCTAAAGCTGTGGCTGGGGAGTCTTCTAATGGTGAAGAAATAGAAGGACGCTTGCCATCATTTCGGGACCCAGAGAAAAAAGAATTTGGATGTGAACATTATAAGAGAAATTGCAAACTTCGAGCTGCATGTTGTGGCAAGTTGTTTACTTGCAGATTTTGCCATGACAATGTTAGCGATCACTCAATGGATAGAAAAGCAACATCGGAAATGATGTGTATGAACTGCTTGAATATACAAGCGGTTGGGCCCATATGCATGACCCCTTCATGTAATGGACTTTCAATGGCAAAATATTATTGCAACATATGTAAATTTTTTGATGATGAAAGGAATGTATATCATTGCCCATATTGCAATTTATGCCGAGTGGGGAGAGGGCTTGGAATCGATTATTTTCATTGTATGAAATGCAATTGTTGCCTGGGGATTAAATCGACATCTCACAAGTGCCTGGAGAAAGGTTTGGAAACAAACTGTCCAATTTGCTGTGACTTCTTATTTACATCAAGTGCTACAGTCAGAGCTCTACCTTGTGGCCATTATATGCATTCAGCTTGCTTTCAGGCATACACGTGTAGTCACTACACATGTCCAATTTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGCATGCTCGATGCTTTGTTGGCTGCTGAGGAGCTTCCTGAAGAGTACAAGGACCGATATCAGGATATACTGTGCCATGACTGTGATCGAAAGGGCACTTCAAGATTCCACTGGTTATATCACAAATGTGGATTTTGTGGCTCTTACAATACCCGGGTGATCAAGTCTGAGTCAACAAATTCCCTCTGCTCCTAG 3747 0.4169 MATPLTGLQHLDVGGGVAVLSNSVNKVDSSSSSPSASNGGLNCSKLESPILIFLFFHKAIRNELDALHRLAMAFATGNRSDIQPLFERYHFLRSIYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSTIQNDESFSKELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLGEQASLVWQFLCSIPVNTMAEFLPWLSTSISPDESEDLQKCLSKIVPEEKLLQKVIFTWMEGRSGANTVESCVDNSQVQCSPSPLAHPIGKVNCACESATTGKRKYSESILDVSDTNGTHPIDEIVLWHNAIKKELREIAVETRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGELSFLQEHAEEESQFNDFRCLIEGIQSEGATSNSEAEFYSKLCSHADHIMETIKRHFCSEEVQVLPLARKHFSFKKQRELLYQSLCMMPLKLIERVLPWLVGSLTDDEAKMFLNNMQLAAPKTDTALVTLFCGWACKARKEGLCLSSSASGCCPAKKLADIEENCVQSSCASASASSLSASGCSVSAESDENKRPVKRNTLEFCKNGDVPETSETDSMQKQCCSARSCCVPGLGVSSSNLGLRSLSTKSLRSLSFSSSPPSLNSSLFIWETDNSSCDTGSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCALSELSVLNESLLISNMSEDTSESNFETSDASVNDNIRKYNELATKLQGMCKSIRVTLDQHIFREERELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKKSPSSDSLTETSEHSPSQRGTEYQESLDLNDQIFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIASQQKLPKAVAGESSNGEEIEGRLPSFRDPEKKEFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLNIQAVGPICMTPSCNGLSMAKYYCNICKFFDDERNVYHCPYCNLCRVGRGLGIDYFHCMKCNCCLGIKSTSHKCLEKGLETNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYKDRYQDILCHDCDRKGTSRFHWLYHKCGFCGSYNTRVIKSESTNSLCS 1248
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1202 1248 Gene3D - 1203 1245 - -
Dere14g1202 1248 SUPERFAMILY RING/U-box 1129 1184 - -
Dere14g1202 1248 Gene3D nmb1532 protein domain like 309 456 - -
Dere14g1202 1248 Gene3D nmb1532 protein domain like 47 198 - -
Dere14g1202 1248 CDD Hr-like 309 438 - -
Dere14g1202 1248 SMART ring_2 1132 1173 IPR001841 -
Dere14g1202 1248 MobiDBLite consensus disorder prediction 889 912 - -
Dere14g1202 1248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1127 1176 IPR013083 -
Dere14g1202 1248 FunFam Zinc finger protein-related isoform 1 1127 1176 - -
Dere14g1202 1248 ProSiteProfiles Zinc finger RING-type profile. 1132 1174 IPR001841 -
Dere14g1202 1248 CDD Hr-like 658 818 - -
Dere14g1202 1248 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 699 1244 - -
Dere14g1202 1248 Pfam Ring finger domain 1131 1173 IPR001841 -
Dere14g1202 1248 SUPERFAMILY CHY zinc finger-like 996 1059 IPR037274 GO:0008270
Dere14g1202 1248 ProSiteProfiles Zinc finger CTCHY-type profile. 1068 1131 IPR017921 -
Dere14g1202 1248 Gene3D nmb1532 protein domain like 651 890 - -
Dere14g1202 1248 ProSiteProfiles Zinc finger CHY-type profile. 996 1065 IPR008913 GO:0008270
Dere14g1202 1248 Pfam CHY zinc finger 1003 1078 IPR008913 GO:0008270
Dere14g1202 1248 CDD Hr-like 52 178 - -
Dere14g1202 1248 SUPERFAMILY Zinc hairpin stack 1069 1125 IPR037275 -
Dere14g1202 1248 Pfam Hemerythrin HHE cation binding domain 306 440 IPR012312 -
Dere14g1202 1248 Pfam Hemerythrin HHE cation binding domain 54 180 IPR012312 -
Dere14g1202 1248 Pfam Hemerythrin HHE cation binding domain 656 819 IPR012312 -
Dere14g1202 1248 Pfam Zinc-ribbon 1179 1236 IPR039512 -
Dere14g1202 1248 CDD RING-H2_Pirh2-like 1131 1174 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere14g1202 Dere-ChrDere14 11857440 11867668 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1202 1 1248 C2H2 Transcription Factor Family AT3G18290 68.384 0.0 1736