Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1192 ATGCTTGCTGTAACAGAGGCCTCAGAATCAGAACACATCAAATGGAGAGGACCCAGGAACCAATTCGCCCATCTCATTTCGGAAACAGATCCGAACCCGCAAATCTCTCCCCTAGTCCAATCCACTCGCTGCAAATCCACCATTTCCTCTCTCCTCCTCTCCACTTTCTCCAACAACGCTTCGACTGAAGCCACACAGCCCAATCTCAACATCAGCAAGAAGAAGACCAATTTCTCGGCGGCAACCTTCAGAGGATTCGGATGCACTGCTGGCGCGTCGCGCCAGGTGTCGGTTCCGGCGGTGATTCGGACGTCGGCTGATTGGCAAGCTACCAAAGCCAGAAAGAAGAAGCACAAAAGGAATGGTAAGAAGAATAGTACGAGCTGTCAAGGCGTTGTTGATGGTTCGAATTCTGGTTCCGCTAATTGTGTTGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTTTCAGCGGATGTTGCTGCCCCTGTCGATTGCGTCATGGCAAGGAAGAATGTGGCTGCAAGAGGGAAGATTGATGCAGAGAAGAAAACCCACAGGGAGCGTCGGCGAACTGTAAACCCAGACAGCATCCCGTTTTTGATCAGTGATCCTGATATTTTCACAAGTCGCTCTGAGTCTTTTGGAACCGCTAAATACTATCGTCATGGTCCACATCCTTCCTCAGAGGGTTTTGCTGAGATGATGCTGCTTCAAGGAGGTCTGATGATGGGGGGAAGATTGAATTCTCACGACCACTATAGAGACTTGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTTATGTGAACACTGGACTTAAAGAAGATGAGATAGGACGTTACATAAGGAAATTTAAGCTTTCGAAGTTAAATGATAAGTCAAGGCATCAAGTTGAAAAGAAATGCAGCATTTGTCAGGAAGAGTATGAAGCTGATGATGAGGTGGGGAGGCTAAATTGTGAACACAGCTATCACTTCCAGTGTTTAAGACAATGGCTTGCACAGAAAAACTGCTGCCCGTTATGTAAGCAAGAAGTTGTTGCTCGTCACTCAGTGGCAAAATCCTGA 1101 0.4678 MLAVTEASESEHIKWRGPRNQFAHLISETDPNPQISPLVQSTRCKSTISSLLLSTFSNNASTEATQPNLNISKKKTNFSAATFRGFGCTAGASRQVSVPAVIRTSADWQATKARKKKHKRNGKKNSTSCQGVVDGSNSGSANCVDFQDVWCGPGIGFSADVAAPVDCVMARKNVAARGKIDAEKKTHRERRRTVNPDSIPFLISDPDIFTSRSESFGTAKYYRHGPHPSSEGFAEMMLLQGGLMMGGRLNSHDHYRDLRLDVDNMSYEQLLELGERIGYVNTGLKEDEIGRYIRKFKLSKLNDKSRHQVEKKCSICQEEYEADDEVGRLNCEHSYHFQCLRQWLAQKNCCPLCKQEVVARHSVAKS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1192 366 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Dere14g1192 366 FunFam E3 ubiquitin-protein ligase rnf12-A 280 359 - -
Dere14g1192 366 Pfam Ring finger domain 312 354 IPR001841 -
Dere14g1192 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 70 357 IPR045191 GO:0061630
Dere14g1192 366 SMART ring_2 313 353 IPR001841 -
Dere14g1192 366 MobiDBLite consensus disorder prediction 109 131 - -
Dere14g1192 366 SUPERFAMILY RING/U-box 312 360 - -
Dere14g1192 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 363 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1192 Dere-ChrDere14 11740055 11744437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1192 72 268 C3H Transcription Factor Family AT1G73760 45.205 1.75e-50 169