Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1165 ATGGGTATCAAGGATCTTCTCCGGTTCATGAAGCCTTATATCGAACCCATTCACATCAAGAAATATGCCGGAAAACGTGTGGGTATTGATGCTTATTCATGGCTTCACAAGGGAGCTTATTCCTGCAGTATGGAGCTTTGTCTCAATTCTGATACTGAAAAGAAGTTCCGGTACATAGAATACTTCATGCATCGAATCAAACTGCTTCGCTACTATAAGATAACGCCGGTTGTTGTTTTTGATGGTGGCAACATTCCTTGCAAGGCAGCAACGGAGGAAGATAGGAAGAGAAAAAGAAGTGCTAATCGCGATTTGGCAATGGATAAGCTCAAAGAAGGGAACGTAAATGCAGCTTCAGAGCTATTCCAGAGAGCAGTGAGCGTTACTCCCATCATGGCCCATCAACTGATTCAGGTTCTGAGATCGGAGCACATAGAGTTTGTTGTAGCTCCATATGAAGCTGATGCTCAGTTAGCATACATGTCCAACATTATAGCAGCAAAGGGTGGAATTGTCGCAGTGATCACTGAGGATAGTGATCTAATAGCATACGGTTGTCCAGCTATTGTCTTTAAGATGGACCGTTATGGGAATGGTGAAAGCATAGAGTTAGACAACGTTTTTAAAGCCCGGAATTGCAAACCTTCCTTCCGAAATTTTGATATGGAACTCATCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCGCGTGCTCATGCCTTAGTTTCCAAGTATCGAAACCTAGATCGAGTGTTATCTGTTCTTAAGTTGGAGAAGGGCAACCAAATGCCAGAAGAATACGCCGAATCCTTCAAAGAGGCAATTGCAGTCTTTCAGCATGCTCGAATATATGATGCCATTGCTAAGGAGCTCAAGCACATGAAGCCACTTCCGCAAAATCTTCTTCAGTCCCTTAATGGAAATCTTGATTTTTTGGGACCTGAAATTCCTCCAACAATAGTTACCGGGATAGCTGAAGGTAACTTAAACCCCTCAACTAAGGAAGCCTTTGATAAGCTTGAATATTCTGGAATTCCTTTAGACCTCGTTGCCCTCGAGAGCAATGGTCAACCCCCGAAAGTTGAAGTTTCGGTAGCATTTACGCAGGAGAGCTCCTTGACAGTCTTTGGCTCCCATAATGCCAGAGAAAATATGACAAGGCAGAATCTGATCACGAATGAAGACAAGTATTCTGGTGAAGCATTGGCACTTCAGAAACTTATTATGCCATTGGTAAATTTGGGAACGGTAGAAAAGGAAAATATTCCTGATGAAACTCCATTAAAGGTTCCTAACAACAACCCATTCAGGATAAGAAAACCTGAGGAAATTTCTTTATTTGAGAGAGAAAACCCTGCTGAAGAAGTTCGTATTGTCAGCAGTGAGGAATATATGGACGTGGGCATGCATCCAGAGAGCTTTCAAGAAGAGGGGTCTGAAAATCTCTCAAGGAAAAGAAAGTTTCAGACCATTTGTTCAGATCAAGCAGAAACTTTTGATGACCAAATTTCAGCAGTGACAGTGATTGAAGTACAAGACCCAGATATTTTATGTTGGACTATGGAATCCCAAGAAAGTGTTAACTCTAAAATTGTAAAAGGCCCTGATTTGAAACGACGATGTGCAAATGAAAAGAAATCCAAGAAAAGCAATTGCAAGAAAACAGGGAGTAAGAATACCACTATCTTGAATTTTTTTTCTCGAGTGTAA 1740 0.4144 MGIKDLLRFMKPYIEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLNSDTEKKFRYIEYFMHRIKLLRYYKITPVVVFDGGNIPCKAATEEDRKRKRSANRDLAMDKLKEGNVNAASELFQRAVSVTPIMAHQLIQVLRSEHIEFVVAPYEADAQLAYMSNIIAAKGGIVAVITEDSDLIAYGCPAIVFKMDRYGNGESIELDNVFKARNCKPSFRNFDMELITGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRVLSVLKLEKGNQMPEEYAESFKEAIAVFQHARIYDAIAKELKHMKPLPQNLLQSLNGNLDFLGPEIPPTIVTGIAEGNLNPSTKEAFDKLEYSGIPLDLVALESNGQPPKVEVSVAFTQESSLTVFGSHNARENMTRQNLITNEDKYSGEALALQKLIMPLVNLGTVEKENIPDETPLKVPNNNPFRIRKPEEISLFERENPAEEVRIVSSEEYMDVGMHPESFQEEGSENLSRKRKFQTICSDQAETFDDQISAVTVIEVQDPDILCWTMESQESVNSKIVKGPDLKRRCANEKKSKKSNCKKTGSKNTTILNFFSRV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1165 579 Pfam XPG I-region 145 235 IPR006086 GO:0004518
Dere14g1165 579 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Dere14g1165 579 CDD H3TH_FEN1-like 223 295 - -
Dere14g1165 579 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Dere14g1165 579 Gene3D - 218 291 - -
Dere14g1165 579 SMART xpgn3 1 102 IPR006085 GO:0004518
Dere14g1165 579 SMART xpgineu 141 213 IPR006086 GO:0004518
Dere14g1165 579 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Dere14g1165 579 FunFam Exonuclease 1, putative 1 214 - -
Dere14g1165 579 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Dere14g1165 579 FunFam exonuclease 1 218 291 - -
Dere14g1165 579 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 509 IPR006084 -
Dere14g1165 579 CDD PIN_EXO1 1 209 IPR044752 GO:0046872
Dere14g1165 579 Gene3D - 1 214 - -
Dere14g1165 579 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Dere14g1165 579 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Dere14g1165 579 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Dere14g1165 579 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1165 Dere-ChrDere14 11471208 11475279 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1165 1 320 Core DNA Replication Machinery Family AT5G26680 25.519 1.28e-13 71.2