Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1137 ATGACTTTTCCTTACCCCTCTCCTAACACAAACACAGACAAAAGTTGCTACTGTTTGAACATTCTCTTAGATGACTGCAATGTGATGATAAGAAGCCAATGTGACAAAGCTTTTTCCAACATTTCTTTTTGGGTATCCTTCCCTGCCCCGTCTCCGTCCCTGTTCCAAAAGATGTCTGGAGATAATGGTAGCCAGGAGCAGAAGAAGAGGATTGTGATTCTGGGTGTTTCTTCCATCCTTCTGGTGGCTATGGTAGCTGCGGTGGCTGTTGGGATAAGCAACACAGATAAAGGGGTAACGAAAAACAATGCCATTTCAACGTCTCAAAGGAATGTCGACACGCTTTGCCTTTCTGCAGAATACAAAGAGACCTGCAAGAAGAGCGTTGAGAAAGTAGCGTCCGACGAAAACGCCGACATGAAAGCCCTCATCAAAGCTGCCTTTAACGCCACGGCGGAGGAGATCACCAAACAGTTACACAACACCACGCTGTTCCAAGAGCTGGAGAAGGACAACAGCACCAAAGACGCCTTGGACGTGTGCAAGGAGGTGTTTGGGTATGCGGTGAGGAGTATTAATGATTCCATCGACAAGGTGGATAAGTTCGATCTCAGCCGCATAGGTGACTTCGCCTACGACCTCAAGGTGTGGCTGTCAGGCGCCATAACCATGCAGCATACATGCTTGGATGGGTTTAATAATTCAACCAGCAAAGCCGGCCAGGAGATGGCCCAGGTATTGAAAACCGCTTTGGAGATGAGTAACAATGCGCTGGACATTGTGGAAGGGTTCTCCAGCGTCGTGGAGGATTTGGACCTGGACGCCCTAGATGATGTTCACTCAGATCCAAACTCGAACACAAGCTCAGAATCACAAGAGGCCAAAAACAAGGGCAGGAAGCTGCTGGCGAAGTCGTCCAAGTCGGATGAAATCCCAACTTGGGTGCACGACCACCACAAAAAGCAGATACAGGTGGGAGGAAAAGAAGTGATGCCGGACGTCGTGGTGGCTCAAGATGGAAGTGGGCAGTTCAAGACATTGACGGAGGCACTCAAGACAGTTCCTCCCAACAACAACAAGCCGTTCGTCATATACGTGAAGGCTGGGGTATACCGGGAGAAAGTAATTATAGAAGCATATACTATGAACTTTGTGACCATCGTGGGTGATGGTCCCACAAAGACCAGGTTCACCGGAAGCAAATCCCAAAAGGATGGGTTCCAAACTTTCCACACCGCAACTTTCTCGGTGAATGCTATGAACTTCATGGCGATAGACGTAGGGTTCGAGAACACAGCAGGAGCAAGCGCGGGGCCGGCGGTGGCGCTTCGGATAACGGGAGACAAGGCCGTGATATACAGGTGCCACGTGGATGGATTTCAAGACACGCTGTATCCGAGTGCGTACAGGCAGTTCTACAGGGACTGCTCGGTGTGGGGAACCATCGACTTCATATTCGGTGATGCAGTGACAGTGTTCCAGAACTGCACCATCTTTGTGAAGAAGGGAGTGGACGGACAGGAAGGCGTGGTGGCGGCTGGAGGCAAAACCCAACAGGCAGGTCCGAGTGCACTGGTGTTCCAAGCCTGCAGATTCCTTCCCGATCCATCCTACCTGAAGACGCCAGCCGTGAAGAAGGGAGGGAAGATATCGTATCTGGCAAGGCCATGGAAGCCGTACGCAAAGACTGTGATCATCGAATCCTACATCGATGAGATATTTAACCCACAGGGCTATATTCCCTTCACTGGCTCCAACTTCGAAGGGACGTGCACGGCTCTGGAGTACAACAACAAGGGTCCTGCGGGTGCAGATGTTTCCCAGAGGGTGAATTGGCCTGGTGTGAACCCCAAGCTCCCCGATCACCAGGCTGCTCAATACTATCCCGGCAAGTACTTCCAAATGACCAATGATCAGGAAGGAGATGCATGGATTGTTGCCTCTGGAGTCCCCTACTCCCTTGGCTCCATGCACGTCTAG 1980 0.5096 MTFPYPSPNTNTDKSCYCLNILLDDCNVMIRSQCDKAFSNISFWVSFPAPSPSLFQKMSGDNGSQEQKKRIVILGVSSILLVAMVAAVAVGISNTDKGVTKNNAISTSQRNVDTLCLSAEYKETCKKSVEKVASDENADMKALIKAAFNATAEEITKQLHNTTLFQELEKDNSTKDALDVCKEVFGYAVRSINDSIDKVDKFDLSRIGDFAYDLKVWLSGAITMQHTCLDGFNNSTSKAGQEMAQVLKTALEMSNNALDIVEGFSSVVEDLDLDALDDVHSDPNSNTSSESQEAKNKGRKLLAKSSKSDEIPTWVHDHHKKQIQVGGKEVMPDVVVAQDGSGQFKTLTEALKTVPPNNNKPFVIYVKAGVYREKVIIEAYTMNFVTIVGDGPTKTRFTGSKSQKDGFQTFHTATFSVNAMNFMAIDVGFENTAGASAGPAVALRITGDKAVIYRCHVDGFQDTLYPSAYRQFYRDCSVWGTIDFIFGDAVTVFQNCTIFVKKGVDGQEGVVAAGGKTQQAGPSALVFQACRFLPDPSYLKTPAVKKGGKISYLARPWKPYAKTVIIESYIDEIFNPQGYIPFTGSNFEGTCTALEYNNKGPAGADVSQRVNWPGVNPKLPDHQAAQYYPGKYFQMTNDQEGDAWIVASGVPYSLGSMHV 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1137 659 ProSitePatterns Pectinesterase signature 1. 358 377 IPR018040 -
Dere14g1137 659 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 111 264 IPR035513 -
Dere14g1137 659 Pfam Pectinesterase 333 633 IPR000070 GO:0030599|GO:0042545
Dere14g1137 659 CDD PMEI-like_3 114 266 - -
Dere14g1137 659 SMART PMEI_2 107 260 IPR006501 GO:0004857
Dere14g1137 659 Gene3D Invertase/pectin methylesterase inhibitor family protein 109 264 IPR035513 -
Dere14g1137 659 FunFam Pectinesterase 4 330 656 - -
Dere14g1137 659 FunFam Pectinesterase 108 265 - -
Dere14g1137 659 ProSitePatterns Pectinesterase signature 2. 478 487 IPR033131 -
Dere14g1137 659 Gene3D - 330 658 IPR012334 -
Dere14g1137 659 SUPERFAMILY Pectin lyase-like 332 654 IPR011050 -
Dere14g1137 659 MobiDBLite consensus disorder prediction 293 310 - -
Dere14g1137 659 Pfam Plant invertase/pectin methylesterase inhibitor 112 260 IPR006501 GO:0004857
Dere14g1137 659 MobiDBLite consensus disorder prediction 276 310 - -
Dere14g1137 659 NCBIfam pectinesterase inhibitor domain 105 261 IPR006501 GO:0004857
Dere14g1137 659 PANTHER PECTINESTERASE 78 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1137 Dere-ChrDere14 11215330 11219142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1137 60 657 Carbohydrate Esterase AT3G05610 37.708 6.29e-144 432