Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g1038 ATGGGAAGGTCTCCGTGCTGTGATGAGATTGGTTTGAAGAAAGGTCCTTGGACCCCTGAAGAAGATCAGAAGCTTGTTAACTACATCCAAAAGCATGGTCATGGGAGCTGGAGGGCTCTTCCAAAACTAGCAGGGTTGAACAGATGTGGCAAGAGTTGCAGGCTACGATGGACGAACTACTTGAGGCCTGACATAAGGAGAGGGAAATTTTCCCAAGAGGAACAACAAACAATTCTGAATCTCCATGCTATCCTGGGAAACAAATGGTCAGCAATTGCGAGCCAGCTACCAGGACGGACAGATAACGAGATCAAGAATTTCTGGAACACCCATCTGAAGAAGAAGCTGATTCAAATGGGTTATGATCCGATGACACACCAGCCTCGGACTGATATTTTCTCAAGTTTGCCACATCTCGTAGCACTCGCTAATCTCCATGGACTTTTGGATCATCAACCATGGCAACAAAGTGCTGCTTCGAGACCACAAGCTGAGGCCATTCAGTTGGCCAGGCTTCAAGGCCTCCAACATCTCCTGCTCCCACAACTTCAAGCTTCTACAACTGAAGCCAACTTAAGCAGTACCTTCACGGACATGAATACCCATAATATTAATCTTTTGAACTCCCTGTATCCGACGAACAGCAAGAACAACTCTGTTTTAAGTTCATCCCAGTTGGAAAACTATTTAACTAATCCTTCTCTAATTGGCGCCAACAATCACCAATTGGGCTATGACTCGTTCTCACACATGCCCGACTTGAAATCGCCTGGTAACTATCATCAACCACCATTAACGTTGAGTCAGGGAGAAACTTCTCCCAATTCACCTTGGCTTCTTTCATGCTCAAGCAGTACTCCATCTCCTTCCCCTGTGCCGGAGATTTCAATGACAAATAGTGTTAATGATGGAGAAGTGGGTGCTTCCATGTGGCCTGACCTCCTGCTGGAGGACCCATTGTTCCATGAGATTTCCTGA 978 0.4622 MGRSPCCDEIGLKKGPWTPEEDQKLVNYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIRRGKFSQEEQQTILNLHAILGNKWSAIASQLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDIFSSLPHLVALANLHGLLDHQPWQQSAASRPQAEAIQLARLQGLQHLLLPQLQASTTEANLSSTFTDMNTHNINLLNSLYPTNSKNNSVLSSSQLENYLTNPSLIGANNHQLGYDSFSHMPDLKSPGNYHQPPLTLSQGETSPNSPWLLSCSSSTPSPSPVPEISMTNSVNDGEVGASMWPDLLLEDPLFHEIS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g1038 325 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere14g1038 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere14g1038 325 CDD SANT 69 112 IPR001005 -
Dere14g1038 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere14g1038 325 MobiDBLite consensus disorder prediction 261 294 - -
Dere14g1038 325 MobiDBLite consensus disorder prediction 258 294 - -
Dere14g1038 325 CDD SANT 16 61 IPR001005 -
Dere14g1038 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 227 - -
Dere14g1038 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere14g1038 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere14g1038 325 FunFam Transcription factor MYB39 69 130 - -
Dere14g1038 325 Gene3D - 11 67 - -
Dere14g1038 325 Gene3D - 69 116 - -
Dere14g1038 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere14g1038 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere14g1038 325 FunFam MYB-related transcription factor 13 66 - -
Dere14g1038 325 SMART sant 66 114 IPR001005 -
Dere14g1038 325 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g1038 Dere-ChrDere14 10427854 10429004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g1038 1 218 MYB Transcription Factor Family AT1G34670 68.326 5.51e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere14g1038 Myb_DNA-binding 2.7e-17 CL0123