Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0944 ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAGGAAGATAGAGATTCGACGAAGAAGAAGAAGGAGAGCAGCGAGAAGAGTGAAAGGAGTTACAGGAAGCGCGATGTCGATGAGAATCTGGATGGTGACGACAGGAAGAACAAGAAGTCCAGAGGCGACGATGAGAATGGGTCAAAAAAGGATCGTGATGACCGCGACAGAGAACGGTCTAGCCGCGAAAAGGAGCGCCATAGGAGTGGCAGGGAGAGGGACGGGGAGAGAGATGGTGAGAGAGAGCGAGAGAGGAGTAGTAGAGAGAAGGATAGGGAGAAGGACAGAGACAAAGAGAGGGATAGGGAGAGAGAAAGAGATAGAAGGGACAGAGAGAGGGAACGGGAGAAAGAAAGAGAGAGGGAGAGGAGAGAGAGGGACAAGGAGAGGGAAAGAGAACGGGAGAGAAGGGAGAGGGAGAAAGAGAGGGAGAGGGAGAGGGAAGAGCGAGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATCGAGATAGAGAGAGAGAACGAGAATTGGATGTTAGAGATAGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTTTAAAGGCAACAGAGAGAGATGTTTACGAATTTTTCTCAAAAGCTGGAAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAACTCAAGACGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCGATGGCAATTGCTCTCTCTGGCCAACTGCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACTGGAGCTGCAGGTGTTGCGGGACCATATGGAGCGGTAGATAGGAAGCTGTACGTGGGGAACCTTCATTTTAACATGACAGAGAGTCAGCTGAGAGAGATTTTTGAGCCATTTGGTCCGGTGGAGCTTGTGCAACTGCCTCTTGACCTAGAGACAGGACATTGCAAGGGTTTTGGTTTCGTTCAGTTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGTAGGACTATCAAGGTTTCATCTGTAACAGATCACGTGGGAAGCCAAGATACTAGTGCAAAATCTGCTGACTTTGATGATGATGAAGGTGGATTGGCCTTAAATGCTCAATCAAGAGCAATGCTTATGGCAAAGCTGGATCGTTCTGGCATTGCCACAAGCATTGCAGGGTCCGTTGGTGTGCCCATTGTGAATGGGTCAGCTCCTGCTCAACAGGCTGCTATCTTGCCTAGTGCTCCAGGTATAATGCCTGCACCAGCTCTGCCAACGCAAATAATGCCTGCCCCAGTGGTAGAACCTGTTGGAAGCCCTAGTGAGTGTCTACTGTTGAAGAATATGTTTGATCCTACCACTGAGACAGAGCTAGATTTTGATGTTGACATTAAGGAGGATGTAGAAGAAGAATGCTCTAAATTTGGCCGGGTGAAACATATTTACGTGGACAAAAGAAGTGCGGGATTTGTGTATTTGCGGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCATATGCGATGGTTTGCACGCCGTTTGATTTCAGCCATCTTCATGCAACCCCATATATATGAAGCAAAGTTTAAAGCGGAAGATTGA 1743 0.4768 MDFDEYDYLEKTVEEQEDRDSTKKKKESSEKSERSYRKRDVDENLDGDDRKNKKSRGDDENGSKKDRDDRDRERSSREKERHRSGRERDGERDGERERERSSREKDREKDRDKERDRERERDRRDREREREKERERERRERDKERERERERREREKEREREREERERSRRSRSRSDRDRERERELDVRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTSAKSADFDDDEGGLALNAQSRAMLMAKLDRSGIATSIAGSVGVPIVNGSAPAQQAAILPSAPGIMPAPALPTQIMPAPVVEPVGSPSECLLLKNMFDPTTETELDFDVDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLRFETVEAASAAQRAMHMRWFARRLISAIFMQPHIYEAKFKAED 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0944 580 CDD RRM2_RBM23_RBM39 315 392 - -
Dere14g0944 580 Gene3D - 309 405 IPR012677 -
Dere14g0944 580 Gene3D - 482 580 IPR012677 -
Dere14g0944 580 FunFam Splicing factor CC1-like 137 296 - -
Dere14g0944 580 SUPERFAMILY RNA-binding domain, RBD 204 292 IPR035979 GO:0003676
Dere14g0944 580 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
Dere14g0944 580 SUPERFAMILY RNA-binding domain, RBD 313 568 IPR035979 GO:0003676
Dere14g0944 580 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 406 504 IPR029123 -
Dere14g0944 580 NCBIfam splicing factor, CC1-like family 91 577 IPR006509 GO:0003723|GO:0005634|GO:0006397
Dere14g0944 580 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 486 569 IPR000504 GO:0003723
Dere14g0944 580 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 509 562 IPR000504 GO:0003723
Dere14g0944 580 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 280 IPR000504 GO:0003723
Dere14g0944 580 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 385 IPR000504 GO:0003723
Dere14g0944 580 MobiDBLite consensus disorder prediction 1 181 - -
Dere14g0944 580 SMART rrm1_1 212 284 IPR000504 GO:0003723
Dere14g0944 580 SMART rrm1_1 314 387 IPR000504 GO:0003723
Dere14g0944 580 SMART rrm1_1 487 564 IPR000504 GO:0003723
Dere14g0944 580 CDD RRM1_RBM39_like 212 284 - -
Dere14g0944 580 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Dere14g0944 580 MobiDBLite consensus disorder prediction 12 181 - -
Dere14g0944 580 FunFam Splicing factor CC1-like 297 402 - -
Dere14g0944 580 Coils Coil 117 171 - -
Dere14g0944 580 CDD RRM3_RBM39_like 485 567 - -
Dere14g0944 580 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 576 IPR006509 GO:0003723|GO:0005634|GO:0006397
Dere14g0944 580 Gene3D - 142 296 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0944 Dere-ChrDere14 9601359 9607389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0944 293 386 Eukaryotic Initiation Factors Gene Family AT4G34110 36.842 7.04e-08 53.5