Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0925 ATGTATGCTTCTTCAACTTCCTCTACTTCACTACTTTTCCAGCATCTTCTTGGGGACTTCCATTCAAGAAGGTTGCTCCTTCTTCACTACCCACTCAACTCACAGGCCAATCCCCCAACTTCCTTAAGCACCCACAATTCAACAGACACAACTAACACTGGAGATGGTAATTTTGACGCTAATGTTGTTATGGTACTCTCGGTCCTACTCTGTGCTCTTATCTGCTCACTCGGGTTGAACTCCATCATAAGGTGTGCCTTGAGGTGTTCCAATTTAGTGGTCAACGTCCAGTCCCAAACCAACCCTCCTGCTCGATTGGCCAACACTGGAGTGAAGAAGAAAGCTATCAAGACTTTCCCCACAGTAAGCTACTCCACTGAGCTGAAACTTCCAGGTTTGGACACAGAGTGTGTGATATGCTTGTCAGAGTTCGCTAATGGTGAACGCGTGCGAATTTTGCCCAAGTGCAACCACGGCTTCCATGTGCGATGCATTGACAAATGGCTGAGTTCACACTCCTCTTGTCCTAAGTGCAGACACTGTCTAATCCACACTTGCCAGAAGATTGTTGGGTGCAGCACCCAGGCTGGCTTGTCTCACCCACCTGAAACCATTGTAAGGATTGCGCCCCTAGAACCTGAACCTTTGGTTCGTGACTACAGGGAAGCTAGCTCTTGA 678 0.4808 MYASSTSSTSLLFQHLLGDFHSRRLLLLHYPLNSQANPPTSLSTHNSTDTTNTGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVNVQSQTNPPARLANTGVKKKAIKTFPTVSYSTELKLPGLDTECVICLSEFANGERVRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIHTCQKIVGCSTQAGLSHPPETIVRIAPLEPEPLVRDYREASS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0925 225 CDD RING-H2_EL5-like 136 179 - -
Dere14g0925 225 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Dere14g0925 225 FunFam RING-H2 finger protein ATL73 98 184 - -
Dere14g0925 225 SUPERFAMILY RING/U-box 115 184 - -
Dere14g0925 225 PANTHER RING-H2 FINGER PROTEIN ATL78 15 214 IPR044602 GO:0016567|GO:0016740
Dere14g0925 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 183 IPR013083 -
Dere14g0925 225 SMART ring_2 137 178 IPR001841 -
Dere14g0925 225 Pfam Ring finger domain 136 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0925 Dere-ChrDere14 9471243 9471920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0925 32 183 C3H Transcription Factor Family AT3G10910 47.170 8.93e-42 138