Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0919 ATGGTGAAAGATGATCTATGTATTACAGTTCCGAGCTTTTTCAGGTGCCCGATTTCGCTTGACGTCATGAAATCCCCTGTCAGCCTCTGCACCGGAGTAACTTACGACCGTTCCAGTATCCAACGCTGGCTCGACGACGGCAACATCACCTGCCCCGCCACCATGCAGGTACTCCAAACCAAGGAATTCGTCCCTAACCATACTTTACAGAGGCTTATCCAGATCTGGACTGACTCGGTTCGACACCGAGTCGAATCTGCCGAGTCACCCGTTGCCAAATCGGTCCCTTCGCGGGACCAAGTCGTCCAGACTATCCGAGATTTGGAGAGTAAGAATGAAAGCCGTTTAGATTCTATCACTGGAATTCTGTGCTTTGCCGAAGAATCTGAAGACAATCGGGAATTCCTTGCAAAAGTAGACGGATTAGTGCCTCTGTTCGTTGGTTTCCTCGACAATGTCGTTGGTGGAGTTACTGGGAGCGTTGAGTTTCTTGAAAAAGTTGTTAAGGCTTTGGATTTAATTCTAAATAAAATTCAAGATCGCGAGGCATTGAAAAATGCGATGGTGAAGAGCCAGCAAAGCAACTGCTTAGCTTCTCTACTTCGTGTTCTGCAACAAGGCAGCTCTGATTCGAGGATCGCATCTGCTAAGCTTTTGACATTCATTGCTGAGGACGTTGAATCGAAACTCTTAATCGCCGGAATGGAAGGCCTTATTTCTGAATTACTTAAAATGATTACACCAGACAAAGATGCGGTGGTAATCGAGAACGGCTTATCCTGCTTGGTTGCAATCTCAACGCCGAAGCGAAACAAGATGAAGCTGATCCATCTCGGAGCTGTTAAGACATTATCGGATTTGCTCTCAGAGACAAAGTGGAGCGTCTGCATCACCGAGAAGGTACTGAAGCTGCTCGAAACGGTGTCTTCTACCAAGGAAGGAAGGTCGGAGATTTGTGAGGACCCAAATTGCGTGGCGTCGATATTGCAGAAGGTGCTGAAAGTCTCGAGTAAGGCAACGGAGCACGCAGTAACGATATTGTGGAGTGTGTGTTATCTATTTCGTGATCAGAAGGCGCAGGAGGCGGTGACGAAGGCGAACGGTTTGACCAAGATTCTGCTTCTGATGCAGAGCAATTGTTCACTTGGGGTTCGCCAAATGTGCGCCGATTTGCTTAAGATTTTCCGGGTTAACTCAAAATCATGTCTCTCGTGCTACCATACTAAGACCACCCATATCATGCCCTTTTGA 1251 0.4732 MVKDDLCITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNITCPATMQVLQTKEFVPNHTLQRLIQIWTDSVRHRVESAESPVAKSVPSRDQVVQTIRDLESKNESRLDSITGILCFAEESEDNREFLAKVDGLVPLFVGFLDNVVGGVTGSVEFLEKVVKALDLILNKIQDREALKNAMVKSQQSNCLASLLRVLQQGSSDSRIASAKLLTFIAEDVESKLLIAGMEGLISELLKMITPDKDAVVIENGLSCLVAISTPKRNKMKLIHLGAVKTLSDLLSETKWSVCITEKVLKLLETVSSTKEGRSEICEDPNCVASILQKVLKVSSKATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSLGVRQMCADLLKIFRVNSKSCLSCYHTKTTHIMPF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0919 416 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Dere14g0919 416 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Dere14g0919 416 SUPERFAMILY ARM repeat 168 402 IPR016024 -
Dere14g0919 416 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Dere14g0919 416 Pfam Neurochondrin 238 347 IPR008709 -
Dere14g0919 416 SUPERFAMILY RING/U-box 6 79 - -
Dere14g0919 416 Gene3D - 93 295 IPR011989 -
Dere14g0919 416 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Dere14g0919 416 Gene3D - 296 403 IPR011989 -
Dere14g0919 416 PANTHER WDSAM1 PROTEIN 9 404 IPR045185 GO:0061630
Dere14g0919 416 CDD RING-Ubox_PUB 11 63 IPR045210 -
Dere14g0919 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 92 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0919 Dere-ChrDere14 9398311 9399561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0919 1 416 U-box Gene Family AT5G64660 55.164 7.66e-149 427