Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0907 ATGAGTGGAAGTGGCAGAAAGCGCTCCTCAAAGTGGGATTTAAGAGATGAACCTAAGCTAAAACCTAATTTGCAATTACCATCCAGGGAACCTTTTTCTGGAGGCAGAGTTTCAAATAAGGATGACATCATGAATAAAGACTCCAATAGAGACTTGGATACCAAAATGGCATGGGACGCAGATGAAAATTATGACATGAAAATGTCTCCAGGGTTTGAGGGCTGGAAACATAAGAGGCATAGTCAATCCCCAAAAAATGGTCTGGACAGGAGTAGGAGCAGGAGCCGGAGCCCTGGCCGTGGTTTTAGGTGGGAATCAGGAGTCAATGACAGAAATAGAATGAGAGCTGGAGGATTGCCACAACCATGTAGAGATTATGCTGCTGGGAAATGCAGAAGAGGCAGCCGTTGCCATTTTCTTCACCATGATAACCGAGATTATGAGGATAGTTGGGACAGTAGGAACAGGAAAGATGGACCTCCCAGATATTCTGCTTCCCATGAGAGTAGGGACTATTCTGTTAGGAGTGGGAGATCTAATGAGACTTGTATTAATTTTGCACAAGGCAAGTGTAGAATGGGAGCATCTTGCAAGTACGTGCATCATAGCAATTCTGATGAACTCAGCAAAGGAACTATAGATGAATCAACTAGAGAGAGGGAATTTGATCGAAGGCGCAGAGAGAATTCTTTCGAACGGGGTGGTGGGCATGAGCCAAACCGCAGTGGTGATACTCCCTGCAAATTTTATGCAGTAGGAAATTGTCGCAATGGTAAGTATTGCAGGTTTTCTCATGATAGGCAGGCATCTAGGAGCCCTAATAGAAGATTAAGGGATGATAGGTGGGGGAGCAATTCTGGTGGAGATCAGGCATTGGATAGAGCAAAAGGGAACTCAGTTAGTCCTAGTAGAAGGCTAAGAGATGATAGATGGGGTCCAGATGGCAATGTGGTTGATGTGGATAAAATGTGGGACAGCCCAAAACTTATTGATGCTGTTGCTGTCTCGGATACAGCAAAGCTTGGTGAAGATAAGAGTGGAAATATGGGTGTTCCAGAACCTGGATTCACTACTTGGCCCCGGAGTGATGGATGGGGCAATAGTTTAGATAACAATAAAGTGTATGCTGAGCCACCATTTGCGGGTGATAAGAAGAAAACAGAACATTGGAAGACAGAAAATGTTGGTGCTACTGTGGGTGTTCCCTTGTCAATAGGCACAGACAAATGGCTTGGTGATGCAGAAATGTCTCCTGATTGGAATTATGGCGCAGGATTGTCTGGGCACATTGAAGATGAGGGTGGACAAAATAAACGTTGTTTAACCCAGGGTGGTGCATTTTTAGCCACCTCTGAACATCACAGATTACAAGTTGTTCCAGGAAAAGGCTTCAACCAGAATGCACAGAACGTAAATGCTTTGCATCCATCAAGCTGTAATGTGGTTGGACAAAGTCAAGTGGCCGTTCCTGTTGTTCCTCCACTTGGAGGGATAGTTGAAGGTATACAGAACCAAGAAGCATCTACTGTAAAAAAGTACAGTGCTGAACCAAGTATCATGGATGTAAACTCATCACAAGTTGGTACAAGAAGTACTCCAACTCAGAATATGGTGAGCAATGAACAGCTTGCTCAACTTACCAGCCTCTCAGCCTCTCTGGTTCATTTCCTTGGAGCAGGTCAGCAGCTTCCACAGATTTATGCTGCTATAAATTCTCATGATGCAAATGACACATTCTTCAAAGTCAAAACTGAAGGCTCTGGTGAGCCTGTTTCGAGTACATTCATCAAGCCAGATCCTGCTGTTGGATTCCAGAAGCAGTATGATCCGATGTGTGATAATATTGAGTCAAAGAAGGCTGATGCAAGTGGGATCAACCCAGCTTTTTCCCCTAGTAAAACAATTGCTCATAATATAGAAACTCCATCAATGTTGTCTAATTCAGGGAGACAAAATCTTGGTGATTCTTGTAAGATTACCTGTCCAGAAGAACAGCAAATTGTCAAGAGTGAACATTTGATGCAATTGCAGCCAGGTCAAAAAATTGAAGTTAATAAGGGGAACAATGAAGTGGTGGCTGAGGAAAGGCAAGATTCTCGAGTAGATAATAGAAATTCAAAAGACAATGGTCCTTCAGAAAATATAGACGAAAATGGACCTGATGAGGCTAAGAAAATGAAGGAAGTAAAGGGGATTCGTGCTTTTAAATTTGCACTGGTGGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCAACAAAGAAGATTATAAAACAATTGTGAAGAAAGTAGTTGCTAAAGTAACTGGTACTATGCAGGGGGCTCATATCCCTCAGACACAAGAGAAAATTGACCACTATTTGTCAGCTTCAAAATCAAAGCTTAACAAACTTGTACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2442 0.4267 MSGSGRKRSSKWDLRDEPKLKPNLQLPSREPFSGGRVSNKDDIMNKDSNRDLDTKMAWDADENYDMKMSPGFEGWKHKRHSQSPKNGLDRSRSRSRSPGRGFRWESGVNDRNRMRAGGLPQPCRDYAAGKCRRGSRCHFLHHDNRDYEDSWDSRNRKDGPPRYSASHESRDYSVRSGRSNETCINFAQGKCRMGASCKYVHHSNSDELSKGTIDESTREREFDRRRRENSFERGGGHEPNRSGDTPCKFYAVGNCRNGKYCRFSHDRQASRSPNRRLRDDRWGSNSGGDQALDRAKGNSVSPSRRLRDDRWGPDGNVVDVDKMWDSPKLIDAVAVSDTAKLGEDKSGNMGVPEPGFTTWPRSDGWGNSLDNNKVYAEPPFAGDKKKTEHWKTENVGATVGVPLSIGTDKWLGDAEMSPDWNYGAGLSGHIEDEGGQNKRCLTQGGAFLATSEHHRLQVVPGKGFNQNAQNVNALHPSSCNVVGQSQVAVPVVPPLGGIVEGIQNQEASTVKKYSAEPSIMDVNSSQVGTRSTPTQNMVSNEQLAQLTSLSASLVHFLGAGQQLPQIYAAINSHDANDTFFKVKTEGSGEPVSSTFIKPDPAVGFQKQYDPMCDNIESKKADASGINPAFSPSKTIAHNIETPSMLSNSGRQNLGDSCKITCPEEQQIVKSEHLMQLQPGQKIEVNKGNNEVVAEERQDSRVDNRNSKDNGPSENIDENGPDEAKKMKEVKGIRAFKFALVEFVKELLKPTWKEGQINKEDYKTIVKKVVAKVTGTMQGAHIPQTQEKIDHYLSASKSKLNKLVQAYVEKVQKA 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0907 813 MobiDBLite consensus disorder prediction 203 247 - -
Dere14g0907 813 MobiDBLite consensus disorder prediction 147 174 - -
Dere14g0907 813 ProSiteProfiles Zinc finger C3H1-type profile. 177 204 IPR000571 GO:0046872
Dere14g0907 813 MobiDBLite consensus disorder prediction 265 315 - -
Dere14g0907 813 MobiDBLite consensus disorder prediction 265 283 - -
Dere14g0907 813 MobiDBLite consensus disorder prediction 1 116 - -
Dere14g0907 813 MobiDBLite consensus disorder prediction 688 711 - -
Dere14g0907 813 Pfam CCCH-type zinc finger 246 266 IPR041367 -
Dere14g0907 813 Gene3D - 235 290 - -
Dere14g0907 813 SMART c3hfinal6 178 203 IPR000571 GO:0046872
Dere14g0907 813 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Dere14g0907 813 SMART c3hfinal6 241 267 IPR000571 GO:0046872
Dere14g0907 813 Gene3D - 120 207 - -
Dere14g0907 813 MobiDBLite consensus disorder prediction 679 723 - -
Dere14g0907 813 ProSiteProfiles Zinc finger C3H1-type profile. 241 268 IPR000571 GO:0046872
Dere14g0907 813 MobiDBLite consensus disorder prediction 8 23 - -
Dere14g0907 813 SUPERFAMILY CCCH zinc finger 244 266 IPR036855 GO:0046872
Dere14g0907 813 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Dere14g0907 813 MobiDBLite consensus disorder prediction 40 62 - -
Dere14g0907 813 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Dere14g0907 813 MobiDBLite consensus disorder prediction 203 239 - -
Dere14g0907 813 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 812 - -
Dere14g0907 813 MobiDBLite consensus disorder prediction 300 315 - -
Dere14g0907 813 MobiDBLite consensus disorder prediction 71 99 - -
Dere14g0907 813 Pfam RNA-binding, Nab2-type zinc finger 183 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0907 Dere-ChrDere14 9247757 9252060 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere14g0907 zf-CCCH_4 3.5e-06 CL0537