Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0890 ATGCCCAGAAGCAGTAGTAGTGATAATAGAAAGAGTTGTAACAGAGGCCATTGGAGACCGGCTGAAGATGAGAGACTAAAACAACTTGTGGAGCAGTATGGTCCCCAGAACTGGAATTTCATTGCAGAACATCTTGATGGAAGATCAGGGAAAAGTTGCAGATTGAGATGGTACAACCAACTAGACCCAAACATAGTCAAAAGGCCATTCACAGAGGACGAAGAAGAAATGCTCTTAGCCCTTCACAAGGTAAAGGGAAACAAATGGGCTGCAATTTCAAGGTTCTTGCCAGGAAGAACTGACAATGCTGTGAAGAACCACTTCCATGTATTAATGGCAAGAAGGAAGAGAGAACGCTTCACACTGTTTGGTGAAAGAAGCAGCCATAATAATGATCATCTTGTTCCTGTCGTTGACTCAACCACTAATAAGCCTAATCCAGGGATTAATCTCAAGTTCCAAGACAACAGAAACATAGGCATCTTTGGCATGTCTTCCTCACATTCATTGCTATTAAATCCTTGGAATAGTCAAAGAGGTACTTCAACCATCACGTCAGAGTTAGTGAGCTTGGCAGCTTCTGGTGCTGCTAGTAATAATATTCAGGCTCACAATGATCACTCAAGTGCTTCAAGTCCTGGTTCTTGCATGCTTAGTAGTTATAATAGCTTTACTGCACCAGGATTTCCCAGTATTGGTAAGGTTGTTCCTCTTCCTTGCAGGTTCTCAAAATCTACTTATGGCCAAAGAACTGAGGATTATTCCATCAAAAGCAAGAAAGGTAAGACAAATATGGAAGAACAAGCTGAAAAGCTAAAGGGTGTTTCCTTCATAGACTTTCTTGGGGTGGGAAGTTGTTCTGTCAGCGAAAGAGGACCATGA 882 0.4195 MPRSSSSDNRKSCNRGHWRPAEDERLKQLVEQYGPQNWNFIAEHLDGRSGKSCRLRWYNQLDPNIVKRPFTEDEEEMLLALHKVKGNKWAAISRFLPGRTDNAVKNHFHVLMARRKRERFTLFGERSSHNNDHLVPVVDSTTNKPNPGINLKFQDNRNIGIFGMSSSHSLLLNPWNSQRGTSTITSELVSLAASGAASNNIQAHNDHSSASSPGSCMLSSYNSFTAPGFPSIGKVVPLPCRFSKSTYGQRTEDYSIKSKKGKTNMEEQAEKLKGVSFIDFLGVGSCSVSERGP 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0890 293 CDD SANT 18 59 IPR001005 -
Dere14g0890 293 CDD SANT 69 112 IPR001005 -
Dere14g0890 293 Gene3D - 15 66 - -
Dere14g0890 293 Gene3D - 68 135 - -
Dere14g0890 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dere14g0890 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Dere14g0890 293 FunFam MYB transcription factor 15 66 - -
Dere14g0890 293 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Dere14g0890 293 PANTHER MYB PROTEIN-RELATED 15 205 - -
Dere14g0890 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere14g0890 293 SMART sant 66 114 IPR001005 -
Dere14g0890 293 SMART sant 14 63 IPR001005 -
Dere14g0890 293 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Dere14g0890 293 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dere14g0890 293 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0890 Dere-ChrDere14 9119613 9120787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0890 4 287 MYB Transcription Factor Family AT4G33450 42.361 5.53e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere14g0890 Myb_DNA-binding 7e-16 CL0123