Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0883 ATGACCATTCCTCACTTATTCAGATGCCCAATCAGTCTAGACTTGTTCGAGGACCCAGTGACTTTATGCACAGGCCAGACCTACGATAGGTCAAGCATAGAAAAATGGCTTGCTCAAGGTAATCTCACTTGCCCTGTCACAATGCAGAAGCTTCATGATTTATCCATGGTCCCCAATCACACTCTTCGCCATTTAATCGATCAGTGGCTTCAATTGGACCTTCAATTCGACCACTTGGGTAACTCTAAAACAATTGACTATCTCCCTTCTCTGAAACACACTCTTCAATCTCAGGAATCCACCTTCCAAAACAAGCTCCAAGCACTTGAAAAGATCAGGCTCTTATCTGATGAATACTGCTCTTTCAAGAAATCTTGCTTCCTCCAACTGGGTTTCTTGCCTTTACTTTTGGAACTGGTTTTTGGGGCTCAGATGTCCAAAGATCATCACATGGAGTTCATAGAGCTAGCTCTTTCTTGCATTCTAAAGTTGTTACCTCTTGGCAGTACCTCTGAGCCTCTGAATATGCTCAGAGAAGAGTCAAATTTAGAATCGTTTCTACTATTATTTGAAAAGGGTAGTACCAATATTAAAACCAGTCTGTGTAATCTCATAGATTCTGCAGCATCATCACATTTAGAAGAGGTATGTTTCGTGCTTGGAAACTCTCACAAACTACTTAACGAACTTGTTCTTCTTGTTCGCCAAAATAATTGCGAGGCTTCCAAGGCTGCAATTAAAGCCATATCAGCGTTATGTTCATTGCAATCAAACAGAGAGAACTTGGTAATAGCAGGGGCAATAGATGGCATCATGAGTTACATTTCAGGATGCGAAAGAAGAGAGAAGAACTTGGCTCCATTGGGAATGGAAATCATAGAGAAACTTATGGTAACAGAGAGAGGAAAAGAAGCATTGGTGAATAGTCCAAATGGTATTGAGACATTGGTGAAGATGGTGTTCAGAGTGAGTAATCAAGAGTGTAGTGAAAATGCAGTGGGGTTGCTTATGATAGTGTGCAGAGAAAGTGGGCGTGCGAGAGAGGAAGCCATTGGAGAAGGAGTTGTGACTCAGTTGCTTTTGCTTCTGCAGAGCCAATGTAATGCCAGAACGAAGACGAAGGCAAGAATGCTTCTCAAATTGCTGAGATCCAAGTGGGCTGAGAAAGGACCAAAAGAGGTCTAG 1185 0.4211 MTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLAQGNLTCPVTMQKLHDLSMVPNHTLRHLIDQWLQLDLQFDHLGNSKTIDYLPSLKHTLQSQESTFQNKLQALEKIRLLSDEYCSFKKSCFLQLGFLPLLLELVFGAQMSKDHHMEFIELALSCILKLLPLGSTSEPLNMLREESNLESFLLLFEKGSTNIKTSLCNLIDSAASSHLEEVCFVLGNSHKLLNELVLLVRQNNCEASKAAIKAISALCSLQSNRENLVIAGAIDGIMSYISGCERREKNLAPLGMEIIEKLMVTERGKEALVNSPNGIETLVKMVFRVSNQECSENAVGLLMIVCRESGRAREEAIGEGVVTQLLLLLQSQCNARTKTKARMLLKLLRSKWAEKGPKEV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0883 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Dere14g0883 394 CDD RING-Ubox_PUB 4 51 IPR045210 -
Dere14g0883 394 PANTHER WDSAM1 PROTEIN 2 388 IPR045185 GO:0061630
Dere14g0883 394 Pfam U-box domain 3 71 IPR003613 GO:0004842|GO:0016567
Dere14g0883 394 Gene3D - 79 394 IPR011989 -
Dere14g0883 394 SUPERFAMILY RING/U-box 2 71 - -
Dere14g0883 394 FunFam RING-type E3 ubiquitin transferase 3 74 - -
Dere14g0883 394 SUPERFAMILY ARM repeat 87 382 IPR016024 -
Dere14g0883 394 SMART Ubox_2 6 69 IPR003613 GO:0004842|GO:0016567
Dere14g0883 394 ProSiteProfiles U-box domain profile. 2 76 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0883 Dere-ChrDere14 9057795 9058979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0883 1 388 U-box Gene Family AT3G19380 32.767 5.52e-48 167