Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0874 ATGGAAGATGAGAATTACAGCAATTTGCAAAACGGGGTCAGCACAGGAAGCCCTGGAAGTCCTTGCTTAATAAAGACAAGCAACAATAATAGTAGCAACAAAGAACAAGATCGCTTTCTTCCCATAGCCAATGTGGGTAGAATCATGAAGAAAGTGCTCCCTCCAAATGGCAAAATCTCAAAGGACGCTAAAGAGACAGTTCAGGAATGTGTGTCAGAGTTCATCAGCTTTGTCACTGGGGAGGCCTCTGACAAATGCCAAAGAGAGAAGAGGAAGACCATCAATGGCGATGATATCATATGGGCCATCACAACCCTAGGGTTTGAGGATTACGTGGACCCTTTAAAATCCTACCTCCAGAAGTATAGAGACTTAGAAGGAGAAAAGCTTAATATTCCAAAACAACAACGTTCTGAACAAAGGCTACACCATCAACAACATCACCAACACCACCATCATCAAGACCAAAATAATAATAATAATAATTTACCTTTAAATAATGTATATTCTTCGACAAATCTCATTTCTCAGCCTCCCTATGTGACCACGGACCAGCCATATTCTCTGCCTTTCTCCCCAAATTCAATTCAGAAACAGTTACAGCCGCAAGACCAGATTGATTCATTGGGGCATTGGTAA 639 0.4131 MEDENYSNLQNGVSTGSPGSPCLIKTSNNNSSNKEQDRFLPIANVGRIMKKVLPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYRDLEGEKLNIPKQQRSEQRLHHQQHHQHHHHQDQNNNNNNLPLNNVYSSTNLISQPPYVTTDQPYSLPFSPNSIQKQLQPQDQIDSLGHW 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0874 212 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Dere14g0874 212 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Dere14g0874 212 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Dere14g0874 212 FunFam Nuclear transcription factor Y subunit B-3 28 156 - -
Dere14g0874 212 MobiDBLite consensus disorder prediction 1 36 - -
Dere14g0874 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 160 IPR027113 GO:0001228|GO:0006355|GO:0016602
Dere14g0874 212 MobiDBLite consensus disorder prediction 135 212 - -
Dere14g0874 212 SUPERFAMILY Histone-fold 36 157 IPR009072 GO:0046982
Dere14g0874 212 MobiDBLite consensus disorder prediction 156 206 - -
Dere14g0874 212 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
Dere14g0874 212 Gene3D Histone, subunit A 26 167 IPR009072 GO:0046982
Dere14g0874 212 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0874 Dere-ChrDere14 8973091 8973729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0874 12 212 CCAAT-HAP3 Transcription Factor Family AT2G13570 66.190 9.03e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Dere14g0874 CBFD_NFYB_HMF 2.6e-27 CL0012