Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0776 ATGCATTTCGCAAAACTTGATGATTCGCCTATGTTCCGGCAACAGCTGCAATACTTGGAAGAAGGTGTAGACTCATTACGGGCGAGATGCCATAAGTTCTACAAAGGATGTCGGAAGTACACGGAAGGGCTCGGAGAGGGATATGATGGGGACATCGCTTTTGCAAGTACCCTTGAAACTTTTGGGGGTGGGCATGGTGATCCTCTCTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTCACTATTGCTTTGAGAGAAATTGGTACATATAAAGAAGTTCTTCGGTCACAGGTGGAGCACATGCTTAATGACCGGTTGCTACATATTCTCAATGTTGACATCCATGATATTAAGGAAGCTCGGAAGCGTTTTGACAAAGCTACCCTTATATATGATCAGGCACGTGATAAGTTTTTGTCATTGAGAAAGAGCACTAGGATTGATATTGCTACTGTCATAGAAGAGGAATGGCACAATGCAAGAAATTCATTTGAGGAAGCCCGTTTTAATCTGGTTAGTGCTCTTAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTGGAGGCTGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATGAGCTATTGCATCAGATGGAACCTTTCATTAGTGAGGTTTTGGCTTATGCACAGCAGTCAAGAGAAAGTTACAATGCTGACCAGATTTCTCTAAATGAAAAAATGCAAGAATATAAAAGACAAATTCATCAAGAAAGTAGATTGTCCTTGAATGGTTCCCATGGTTCTCCTGGAGACTGTACACAGTCTTTTTCTAAGATATCAAATGAAGTGGTAGATGCAGTAATGGAATCTGCTGCAAATGGAAAGGTTCAAATTATTAGACAAGGATTTCTTTCAAAGCGCTCCTCCAATCTGAGGGGTGATTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCTTGGAACTGGTCACATAGTGGCAATCTGCCATCTGTACAGAGGAATAATGCTGCTGAAAATGGTTCTGGGCTTCTGAGCCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTGTAGCTCGTCATGCAGTGAATTTGCTTACATCAACTATTAAGGTTGATGCTGAACAGTCAGATTTAAGATTTTGCTTCAGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCGGAGAATGCGGTGGACCAGATGGAATGGATTGAAAAGATGACAGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCAGTAGAAATGCCTCTCACAGCTGACTCTGAAAGTGGTGACTGTTACTCTGCCAGCAAGATTGATATATTGGAAAGTCCTCCTGATGGTGGTCAGCCAATGACTACGGAGTGTACATCCAAGAACTTCACCTCTAGTAACCACTTACGTGAATGTAAAAGTTTGCAATTGCATAAACAGAGTACAAGAAGTGAAAAACCGATTGATGTTCTTAGAGGGGTAAGTGGGAATGACAGATGCGCTGATTGTGGTAAGCCTGAACCAGACTGGGCATCCCTAAACCTTGGCATTCTTATATGCATCGAGTGCTCTGGCGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTCTGGGACCCTTCTGTCTTAACCATGTTTCAGTCACTGGGCAATCACTTTGCAAACTCAGTCTGGGAAGAGAGGTTGCATTCAACGAGCAATATGCAAGCTGATGACATGCCTGTTGGAAACAAGTTACTTCGTGCTAGGAAACCAGAACATGATGATCCTATTTCATTAAAAGAGAGGTTCATTCACGCAAAGTATTCTGAGAAAGTCTTTGTTGACCAGATTAAGAGTAATAACAATCTTCTTTCAGCGGCGCAACGGTTGTGGGAAAGCGTCTGTGCCAATGACAAGAAAGCAGTGTACCAGTATATTGTGAAGTCTGATTTGGATGTCAATGCTGTCAGCGGGCAAGAATATTTTGATGATGCTTTTGACATGCCTTCTACAAGCAATTCAAAATCTTTATTTAAAAGTGAAAATCAGTCAATAGAGGACATACTAGATGGTTCTAGCGTGCTTCACCTGGCATGCCTAACTGCTGACATTGGCATGGTAGAGCTGCTCTTACAATATGGTGCAGATGTAAATGCTTCTGATTCAAGAGGTCGCACGCCACTGCATTACTGTATTATCAGAGGAAAAAGTGCAGCTGCAAAATTGCTTCTTATGAGGGGAGCCAATCCACATGCCGTAGACGAAGGCGGCAATACTCCTCTTAAGCTTGCATCAGAATCCGCTTCTGTTAGCAATGATGTTCTTGCCCTCCTTGCTAGCAGATGA 2394 0.4198 MHFAKLDDSPMFRQQLQYLEEGVDSLRARCHKFYKGCRKYTEGLGEGYDGDIAFASTLETFGGGHGDPLFVALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHILNVDIHDIKEARKRFDKATLIYDQARDKFLSLRKSTRIDIATVIEEEWHNARNSFEEARFNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYELLHQMEPFISEVLAYAQQSRESYNADQISLNEKMQEYKRQIHQESRLSLNGSHGSPGDCTQSFSKISNEVVDAVMESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNWSHSGNLPSVQRNNAAENGSGLLSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDAEQSDLRFCFRIISPVKNYTLQAENAVDQMEWIEKMTGVIASLLSVQSVEMPLTADSESGDCYSASKIDILESPPDGGQPMTTECTSKNFTSSNHLRECKSLQLHKQSTRSEKPIDVLRGVSGNDRCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNHFANSVWEERLHSTSNMQADDMPVGNKLLRARKPEHDDPISLKERFIHAKYSEKVFVDQIKSNNNLLSAAQRLWESVCANDKKAVYQYIVKSDLDVNAVSGQEYFDDAFDMPSTSNSKSLFKSENQSIEDILDGSSVLHLACLTADIGMVELLLQYGADVNASDSRGRTPLHYCIIRGKSAAAKLLLMRGANPHAVDEGGNTPLKLASESASVSNDVLALLASR 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0776 797 Pfam Ankyrin repeats (many copies) 708 760 IPR002110 GO:0005515
Dere14g0776 797 Pfam Putative GTPase activating protein for Arf 502 631 IPR001164 GO:0005096
Dere14g0776 797 Gene3D - 642 797 IPR036770 -
Dere14g0776 797 CDD BAR_SFC_plant 15 215 IPR035670 -
Dere14g0776 797 Pfam PH domain 293 423 IPR001849 -
Dere14g0776 797 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 480 638 - -
Dere14g0776 797 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Dere14g0776 797 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Dere14g0776 797 ProSiteProfiles Ankyrin repeat region circular profile. 706 737 - -
Dere14g0776 797 SMART ANK_2a 706 735 IPR002110 GO:0005515
Dere14g0776 797 SMART ANK_2a 739 768 IPR002110 GO:0005515
Dere14g0776 797 ProSiteProfiles Ankyrin repeat profile. 706 738 IPR002110 GO:0005515
Dere14g0776 797 SMART arf_gap_3 498 637 IPR001164 GO:0005096
Dere14g0776 797 Gene3D - 284 437 IPR011993 -
Dere14g0776 797 SUPERFAMILY BAR/IMD domain-like 6 314 IPR027267 -
Dere14g0776 797 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Dere14g0776 797 ProSiteProfiles Ankyrin repeat region circular profile. 739 771 - -
Dere14g0776 797 SUPERFAMILY ArfGap/RecO-like zinc finger 498 631 IPR037278 -
Dere14g0776 797 SMART PH_update 292 429 IPR001849 -
Dere14g0776 797 SUPERFAMILY PH domain-like 204 426 - -
Dere14g0776 797 CDD PH_ACAP 294 431 - -
Dere14g0776 797 Coils Coil 227 247 - -
Dere14g0776 797 SUPERFAMILY Ankyrin repeat 651 783 IPR036770 -
Dere14g0776 797 Gene3D Arf GTPase activating protein 478 638 IPR038508 -
Dere14g0776 797 ProSiteProfiles ARF GTPase-activating proteins domain profile. 498 637 IPR001164 GO:0005096
Dere14g0776 797 CDD ArfGap 501 624 - -
Dere14g0776 797 Coils Coil 118 138 - -
Dere14g0776 797 ProSiteProfiles PH domain profile. 291 427 IPR001849 -
Dere14g0776 797 PANTHER CENTAURIN/ARF 3 795 IPR045258 GO:0005096
Dere14g0776 797 ProSiteProfiles Ankyrin repeat profile. 739 771 IPR002110 GO:0005515
Dere14g0776 797 PRINTS HIV Rev interacting protein signature 552 573 IPR001164 GO:0005096
Dere14g0776 797 PRINTS HIV Rev interacting protein signature 510 529 IPR001164 GO:0005096
Dere14g0776 797 PRINTS HIV Rev interacting protein signature 529 546 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0776 Dere-ChrDere14 8060546 8070674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0776 488 631 C2H2 Transcription Factor Family AT3G07940 38.095 2.16e-21 93.2