Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0769 ATGATTCTTGTAGCGGACACGAAACAGCATCATAGGGCGACCGGCGAGCGCAACCGCCGGAGATTCGCCCTACGCTCGGCGGGATATACAGTATCCCGATTTGAGCTGCGAATTGTGAATTATTCTTTCTTATCCTTCACTTTTTTTGAGAGATCGCCGGGAAGGCAATGCACTGAGAGAAGCAAGGAGTTTTTGCAGCGACGTAGCAAATATGTTGAGATCCCCCTGTCTCTGAATGCCGTGGACCGCGTACAAGATTCATTCCTTCTGTTTCTTCTCAAGTTTCCAGATGAGCAGTTGCTGAATTTTGTGGAGAAGCCGGGGGAGAAAGAATTTTGGATTCTGTGCGCTGGCGAGTTGGTGTTTAAATTGAGAAGTTCCCTTCCTCTCGGAAAATTTGGGTTTCTGAACTTGATCTGTCATGGTTTGAGGCTTTCCTTTAAAGTTCCCCTTCCATCTGTTCATGTTGCTGACACAACCAAGGAGGAGGATTTTAGCCTCAAGCTAGATACGAGGAGTGTTGGATTGCAGAAGCCAAAATCCTTGCATGACCATTATTTACAAGGGAAAGTAGGAGCATCACCTCGAAGCATTTTGAATACGTCGTCACCCCTAGAAATGAGTGCCAACTCAGGCTTGCCAATGTCACAGACAAGTCTGTCAGGAGAAGCTATGGAAAAGCTGCATGTTGGCAGAGGTGGCTTCATTGATGTGTCAAAGGCAACCAAGGAATCAATGAATCATCACCCCAGATCATGGTCTAATGCGTATATGCAGCCAGAATCAACCTCTTATGGTGTATCTGGGAACAGGATTGTTGCTGATACTGCTTCTCATGAAAGTAGTCTATTCTCAAGCTCACTGTCTGAGATATTTAGCCAAAAATTGAGGTTATCGCGAAATGATGTTCTGTCTCATCAGCCTGTTACCATTGGTTCCCTTCCTGAGGAAGAGCCATATAAATCTCTTAAAGAAATTGAGGCTGACACTATTGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTACTAATGAGTTAGGATACACAGCTCAAGCCAGAACAAGCGACGACTTTGAAGATCTTGATTTATTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGAGATGAACATCTAAGTTTGGGAAAAAGAATCAGCTCTCAGGATGTAGATTGTGGGTTTTTTGGAGGTTTCAAAGGAAAAGTTCCTTTTGGTGAACAACCTTCTAGAACTCTTTTTGTTAGAAACATCAATAGCAATGTTGAAGATTGTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGACATTCGAACCATTTATACAGCCTGCAAGCATCGGGGGTTTGTGATGATTTCCTATTATGACCTAAGGGCAGCACAAAAAGCAATGCAAGCACTTCAAAATAGGTCATTGAGGTCTAGGAAACTTGACATACATTATTCAATTCCAAAGGGCAATGCTCCTGAGAAGGATATAAGCCATGGAACTCTGGCGCTATCCGGTCTTGATTCTTCTGTTTCAAATGATGAGCTTGAACATATTTTTGGATTTTATGGAGAAATAAAAGAAATCTATGAATCTCCAGAAGTGAATTGTCAAAAATTTATTGAATTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCATTAAACAGGAGTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGGGAACGACATGTCTGACCCAACAGTCTCACATGGGGCAAGATGAACCTGATTTTGGTCAAAATCTTTGTGACAACTTATCACTAAGACAGAAGGCAACAATGTCTTCTGGAGTAATTGCATCTGGCTGCTTAGGAAATGGATCTAATCCGGGATTTCACTCTGCAATACAGCAACCTATTACTGCATTAATTGATAATGCATTCTCTCCTGTAAATTCTAGCATTCACAAAACAGTGAGAGGGCCGTCTTCTGGAAAAGTGCCTGGTGTTTGTGATTCCAGTAACTTTCTCGAGGCAATGAAATCTGCCTCTGTCCCAAGATTCCATCCTCATTCCTTCCCTGATTATCATGATAGTTTTGCTAATGGTAGTGCTTATAACTTGTCAAGCATCGTTGGCAATGTGGCTGGCAGTATTGGTGCTGGAGTGACAGAAGGCTCAGATAGCAGGCACAATCAGGGAATGGGTTCAACTGGGAATCTGATGGAATTTAAGGGAGTAGGAAATGGGAACCACCCACGTCATGGACTTTATCATGTGTGGAACAGCTCCAATTTGCATCAGGAACCTTCACCAAGTCCCCTGCTTTGGCATAAAACACCATCATTTGTTAATGGTGCTTGTGCTCCTTGCCTTCCACAAATGCCCAGCTTTCCTAGAACACAGCCTCATATGCTGAGAGCATCACATGTAGACCACCATGTTGGGTCAGCACCAGTTGTTACAGCCTCCCCCTGGGACAGACAACATTCTTATTTGGGAGTGTCTCCTGAAGCTTCTGGTTTTCGCATGGGTTCTCTAGGAAGTGCAGGTTTACCTGGTAGCTGGCAAATGCATCCTCCAGATTTGTCTTCTCACAACATGTTTTCTCATATTGGTGGGAATGGCACAGAATTGACATCTAATGCTGGGCAGAGCTCTCCAAAGCAGTTGTCACATGTTTTCCCTGGGAGACATCCGATGACTTCAATGTCTAAATTTGATTCCAATGAAAGAATGAAGAATCTGTATCCCCTCCGGAAAAGTGAAGCTAACACTAACAATGCTGACAAAAAGCAATATGAACTTGACCTAGGCTGTATATTGCGTGGGGAAGACAACCGAACAACTCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGTCGGGGAACTTATGATTTTCTTTATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCATTTATTAATATGATTGATCCTGCTCAGATTATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAATTTAACAGTGAAAAGGTAACCTCACTTGCATATGCCCGAATTCAGGGGAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGCCTAATGAATGAAGATAAGCGTTGCCGTCCAATTTTATTCCACACAGATGGCCCGAATGCTGGTGATCCGGAGCCCTTCCCGATGGGTACTAATATTAGATTGAGACCTGGAAAATCTCGCTCAAATGGCAATGAGGAGAATCGCAACCAGGGGGGTCCTTCAACTTTGGCAAATGGAGAGGGTACTACTAATGGAATAGATTCTTCATTGAGCGCTTTACGGAATTCTGACTGA 3348 0.4307 MILVADTKQHHRATGERNRRRFALRSAGYTVSRFELRIVNYSFLSFTFFERSPGRQCTERSKEFLQRRSKYVEIPLSLNAVDRVQDSFLLFLLKFPDEQLLNFVEKPGEKEFWILCAGELVFKLRSSLPLGKFGFLNLICHGLRLSFKVPLPSVHVADTTKEEDFSLKLDTRSVGLQKPKSLHDHYLQGKVGASPRSILNTSSPLEMSANSGLPMSQTSLSGEAMEKLHVGRGGFIDVSKATKESMNHHPRSWSNAYMQPESTSYGVSGNRIVADTASHESSLFSSSLSEIFSQKLRLSRNDVLSHQPVTIGSLPEEEPYKSLKEIEADTIGNLLPDEDDLFSGVTNELGYTAQARTSDDFEDLDLFSSGGGMELEGDEHLSLGKRISSQDVDCGFFGGFKGKVPFGEQPSRTLFVRNINSNVEDCELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQKAMQALQNRSLRSRKLDIHYSIPKGNAPEKDISHGTLALSGLDSSVSNDELEHIFGFYGEIKEIYESPEVNCQKFIEFYDVRAAEAALRALNRSDIAGKQIKLEPGHPRGTTCLTQQSHMGQDEPDFGQNLCDNLSLRQKATMSSGVIASGCLGNGSNPGFHSAIQQPITALIDNAFSPVNSSIHKTVRGPSSGKVPGVCDSSNFLEAMKSASVPRFHPHSFPDYHDSFANGSAYNLSSIVGNVAGSIGAGVTEGSDSRHNQGMGSTGNLMEFKGVGNGNHPRHGLYHVWNSSNLHQEPSPSPLLWHKTPSFVNGACAPCLPQMPSFPRTQPHMLRASHVDHHVGSAPVVTASPWDRQHSYLGVSPEASGFRMGSLGSAGLPGSWQMHPPDLSSHNMFSHIGGNGTELTSNAGQSSPKQLSHVFPGRHPMTSMSKFDSNERMKNLYPLRKSEANTNNADKKQYELDLGCILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVTSLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRLRPGKSRSNGNEENRNQGGPSTLANGEGTTNGIDSSLSALRNSD 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0769 1115 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 497 570 IPR000504 GO:0003723
Dere14g0769 1115 MobiDBLite consensus disorder prediction 1050 1115 - -
Dere14g0769 1115 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 564 IPR000504 GO:0003723
Dere14g0769 1115 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 414 478 IPR000504 GO:0003723
Dere14g0769 1115 MobiDBLite consensus disorder prediction 1073 1115 - -
Dere14g0769 1115 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 412 485 IPR000504 GO:0003723
Dere14g0769 1115 FunFam Protein MEI2-like 1 496 590 - -
Dere14g0769 1115 FunFam MEI2-like protein 5 isoform 2 401 495 - -
Dere14g0769 1115 SUPERFAMILY RNA-binding domain, RBD 941 1025 IPR035979 GO:0003676
Dere14g0769 1115 SUPERFAMILY RNA-binding domain, RBD 409 571 IPR035979 GO:0003676
Dere14g0769 1115 CDD RRM3_MEI2_like 942 1027 IPR034454 -
Dere14g0769 1115 Gene3D - 405 492 IPR012677 -
Dere14g0769 1115 PANTHER RNA RECOGNITION MOTIF-CONTAINING 244 1105 - -
Dere14g0769 1115 Pfam RNA recognition motif 2 939 1035 IPR007201 -
Dere14g0769 1115 CDD RRM1_MEI2_like 411 486 IPR034453 -
Dere14g0769 1115 SMART rrm1_1 941 1017 IPR000504 GO:0003723
Dere14g0769 1115 SMART rrm1_1 413 481 IPR000504 GO:0003723
Dere14g0769 1115 SMART rrm1_1 498 566 IPR000504 GO:0003723
Dere14g0769 1115 MobiDBLite consensus disorder prediction 871 897 - -
Dere14g0769 1115 Gene3D - 493 589 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0769 Dere-ChrDere14 7995923 8005869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0769 407 563 Eukaryotic Initiation Factors Gene Family AT3G16380 26.923 6.84e-09 57.8