Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0712 ATGGTTTCAACGAGACGTAGTGGATCTCTCTCTGGCAACAATACCAAAAGATCTTCCTCGTCGGAAGAGAAGTCTCCCTCCCCAAAGCGTCAAAAGGCCGACAATGGTGGTGCGTCCGAGAAGCCGATACCTGCAGCGGAGAATTCCAAAGAAGTGTGTACTCCGGAGCCAGCGGCTGATCCTGGAGAATGTGGGTCCGGCGATGCTCAGATCGCTGGAGCGGGTGCTGCTCATGGTCTGAGTTCTGGAAAGGGTGAGGCTGCGCCTGCTGTTGCTGTGGCGGCGCCGATCGGTGATGGGTCTTCGCCGACTTTGGTGGTTGATAAGCCGAGAGGTTCACTCTCTTCCCGGAGTATATATCAGAAGCAAAATCCAACTTTTGAGACTTCAACACCCTGGTGCAGGCTCCTTTCACAATCTGCGCAGCATTCAAATGTTGATATCTGCGCACCGAATTTCACCATTGGTTCTAGCAGAAATTGCAACTTTCCATTGAAGGATCAGACTATAAGTGGAAATTTATGCAAGATCAAGCTTACCCAGCGTGAGGGAAGTTCTGTGGCTGTGCTAGAAAGTACTGGTAGCAAAGGATCTGTGCTAGTTAATGGGATGCTTGTCAAGAAGAATACCAGTTGTGTGCTTAACTCAGGCGATGAGGTGGTCTTCGGTTTGCTGGGAAATCATTCTTATATTTTTCAGCAACTAAATAATGAGGTTGCAGTTAAGGGCACAGAAGGTCAGGATGGTGTTGGGAAATTTTTGCAGCCTGAAAGGAAAACTGGAGACCCATCAGCTGTGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAGCCTTAGACAGGATCTTTCAAGACGCAAATCTCCATCTCAGACTACCAGTAAATCTCTCCCGGGTACTGACATCTCTACTCATTCTATTATCCATGATGGTATAGAAATTGAGCTTGATGGCCTGGAAGGCAACTCAGCTCCAACTGTAGGAAGTGATAAAGCAGCTGATGTTGGTGCAATTGACAAGAATCCTTCCTTGGATTGCAATCTAGATGCTGGAACTGAGGCAGGCAATGTATTGGAAGAAAGAAATGGGACAAGAGATGCGCAGGTAGCATCAACTTCGGGCATGTCTGTGCGCTGTGCGGTGTTTAAAGAAGATGTTCGTGGTACAATACTGGATGGAAAAGAAATAGAAGTGTCATTTGATGACTTCCCATACTATTTAAGTGAAAATACAAAAAATGTCTTGGTTGCAGCTTGCTTTATACACTTGAGGCATAAAGAGTATGCAAAGTTCACTACAGATCTTACAACAATAAACCCTCGTATCTTACTTTCAGGACCTGCTGGGTCAGAAATATATCAAGAGATGTTGGCAAAAGCACTTGCCAATTACTTTAGAGCTAAGTTACTCATATTTGATAGCCATTTGCTTTTGGCTGGTTTGTCATCCAAGGAAGCTGAGCTGCTCAAAGATGGATCTAATGCTGAAAAATCTTGCAGTTGCACTAAGATAAGTCCTACATCCACAGACTTGACTAGGAGCATGGACCCATCAGCTAGTGAAACAGATTCACCCAACTCTTCAAATGCACCTACTTTATGTGGCCTTGAATCCCAGCCTAAGTCAGAGACTGATACTGTAGCATCTACCTCTGGGACCGCTAGAAATTGCTTGTTTAAACTAGGTGACAGGGTAAAATTTAATATTTTATCTTCTGGTGGCTTGTATCAGACATCTTCAAGGGGCCCACCTAATGGAAGCAGGGGGAAGGTTGTCTTACATTTTGATGATAATCCTTTGTCAAAAGTTGGTGTAAGATTTGATAAACCGATACCTGATGGAGTTGATCTAGGAGGTGCCTGTGAGGGGGGTCAAGGATTTTTCTGTAATGTTACCGATCTTCGATTGGAAAACAGTGGTGTAGATGAATTGGACAAATTACTGATTAATTCATTGTTTGAGGTTGTGTTTAATGAGAGCAGAAGTGCTCCTTTAATATTGTTCATGAAAGATGCTGAGAAGTCTATTGTGGGAAATGGTGATCCATATTCATTTAAAAGTAAACTTGAAAAGCTTCCTGACAATGTGGTTGTTATAGGTTCACACACTCATGCTGACAGTCGAAAGGAGAAGTCGCATCCAGGGGGTTTGCTTTTTACAAAGTTTGGCAGTAATCAGACTGCCCTTCTTGACTTGGCATTTCCGGATGGTTTTGGAAGATTGCATGACAGGGGGAAAGAAGTCCCAAAGCCAAACAAGACTTTGACTAGGCTTTTCCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGATACTGAGACTCTCAAAATCAAGGGAAATTTGCATAACCTGCGCACAGTTTTGGGCCGTTGTGGAATGGAGTGTGAAGGACTAGATACCCTATGCATAAAGGACCTAACACTTACAAGTGAAAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCACCACCTAATGCAGAATCCAGAGGCAGATCCTGATGCAAAGCTTGTATTGTCTTGTGAGAGCATTCAATATGGAATTGGGATCTTGCTGGCTATCCAGAATGAGTCTAAGAGCTTGAAGAAGTCTCTTAAGGATGTTGTTACAGAAAATGAATTTGAAAAGAGGCTTTTGGCCGATGTTATCCCACCTAGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCTTGCAAGGGGATCTTATTATTTGGTCCCCCTGGAACGGGTAAGACAATGCTTGCGAAGGCTGTTGCTACAGAAGCTGGTGCAAATTTTATCAATATTTCCATGTCAAGTATTACATCGAAGTGGTTTGGTGAGGGCGAGAAATACGTGAAAGCTGTATTTTCTCTCGCCAGTAAAATTGCCCCCAGTGTTATATTTGTTGATGAAGTTGACAGCATGTTGGGACGGAGGGAAAATCCAGGGGAGCATGAGGCCATGAGAAAGATGAAAAATGAATTTATGGTAAATTGGGATGGTTTACGTACAAAGGACACTGAGCGAGTTCTTGTACTAGCAGCGACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATCCGGAGATTGCCACGAAGATTGATGGTAAATCTGCCAGATGCTCCAAATAGAGCAAAAATTTTGAAAGTTATACTAGCAAAAGAGGACTTGTCAGCTGGTATTGACTTGGATGCAATTGCAAGTATGACAGAAGGATATTGCGGAAGTGATCTAAAGAATCTGTGTGTAACTGCTGCGCATCGTCCAATTAAAGAGATATTGGAAAAGGAAAAAAAGGAGCGTGCTGCTGCTCTAGAGGAAGGTAAAACTGCTCCACCCTTAAGTGGAAGTGCTGATATTCGATCTTTAAACATGGAAGACTTCAGATATGCTCATGAACGGGTATGTGCAAGTGTATCCTCTGAATCGGTAAATATGACTGAGCTTTTACAGTGGAATGAGCTATACGGCGAAGGTGGTTCAAGAAGAAAGAAAGCACTCAGCTATTTCATGTGA 3624 0.4346 MVSTRRSGSLSGNNTKRSSSSEEKSPSPKRQKADNGGASEKPIPAAENSKEVCTPEPAADPGECGSGDAQIAGAGAAHGLSSGKGEAAPAVAVAAPIGDGSSPTLVVDKPRGSLSSRSIYQKQNPTFETSTPWCRLLSQSAQHSNVDICAPNFTIGSSRNCNFPLKDQTISGNLCKIKLTQREGSSVAVLESTGSKGSVLVNGMLVKKNTSCVLNSGDEVVFGLLGNHSYIFQQLNNEVAVKGTEGQDGVGKFLQPERKTGDPSAVAGASILASLSSLRQDLSRRKSPSQTTSKSLPGTDISTHSIIHDGIEIELDGLEGNSAPTVGSDKAADVGAIDKNPSLDCNLDAGTEAGNVLEERNGTRDAQVASTSGMSVRCAVFKEDVRGTILDGKEIEVSFDDFPYYLSENTKNVLVAACFIHLRHKEYAKFTTDLTTINPRILLSGPAGSEIYQEMLAKALANYFRAKLLIFDSHLLLAGLSSKEAELLKDGSNAEKSCSCTKISPTSTDLTRSMDPSASETDSPNSSNAPTLCGLESQPKSETDTVASTSGTARNCLFKLGDRVKFNILSSGGLYQTSSRGPPNGSRGKVVLHFDDNPLSKVGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGVDELDKLLINSLFEVVFNESRSAPLILFMKDAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTHADSRKEKSHPGGLLFTKFGSNQTALLDLAFPDGFGRLHDRGKEVPKPNKTLTRLFPNKVTIHMPQDEALLASWKQQLDRDTETLKIKGNLHNLRTVLGRCGMECEGLDTLCIKDLTLTSENAEKIVGWALSHHLMQNPEADPDAKLVLSCESIQYGIGILLAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSAGIDLDAIASMTEGYCGSDLKNLCVTAAHRPIKEILEKEKKERAAALEEGKTAPPLSGSADIRSLNMEDFRYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFM 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0712 1207 CDD RecA-like_ATAD1 906 1072 - -
Dere14g0712 1207 Gene3D - 132 241 - -
Dere14g0712 1207 ProSitePatterns AAA-protein family signature. 1046 1065 IPR003960 GO:0005524|GO:0016887
Dere14g0712 1207 Pfam ATPase family associated with various cellular activities (AAA) 943 1072 IPR003959 GO:0005524|GO:0016887
Dere14g0712 1207 MobiDBLite consensus disorder prediction 22 36 - -
Dere14g0712 1207 SUPERFAMILY SMAD/FHA domain 120 230 IPR008984 GO:0005515
Dere14g0712 1207 MobiDBLite consensus disorder prediction 1 21 - -
Dere14g0712 1207 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 381 1206 - -
Dere14g0712 1207 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 901 1077 - -
Dere14g0712 1207 Gene3D - 901 1182 IPR027417 -
Dere14g0712 1207 MobiDBLite consensus disorder prediction 1 70 - -
Dere14g0712 1207 Pfam FHA domain 154 223 IPR000253 GO:0005515
Dere14g0712 1207 CDD FHA 135 233 - -
Dere14g0712 1207 Pfam AAA+ lid domain 1097 1131 IPR041569 -
Dere14g0712 1207 MobiDBLite consensus disorder prediction 495 547 - -
Dere14g0712 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 1176 IPR027417 -
Dere14g0712 1207 Coils Coil 1207 1207 - -
Dere14g0712 1207 Gene3D - 1075 1169 - -
Dere14g0712 1207 MobiDBLite consensus disorder prediction 280 302 - -
Dere14g0712 1207 SMART AAA_5 939 1076 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0712 Dere-ChrDere14 7516624 7528974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0712 938 1147 Calmodulin-binding Proteins AT3G56690 36.449 2.02e-31 131