Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0681 ATGGATCCCTCTGAATCCGATTCAACTGCTGTTTCGAACGCCACCAAGAACACGGAATTGGGCCTTCAGTCAGCTCCTTCTTTCCCTAGTTCCCATCACGATCCTGAATCGTCAGATCTCAATCACCGGGATGAGGCTGAGGCACTTCAGGAGGAGCTTCAGAACAAGTTGGATTTGAAGGACAAGGATGAAGGGGACGAAAAGAAAAACGACAAGGAAGATGCGGAATTTAATGATCGTGAGGAAGTATATGGTAAAGCTGGTACTGGAGAATCTGATAAGGAAGTGTTTGACGAAGATAACTGGAATTGGAATGGAAATGAGGACAATAGTTGGACGGAGAATGCGAACGACGGTGAGAATGATAAGTTTGGTTTAGATGATGTAACTGTCGGAGATGAAGTAGAGAAGAACGATGAGGAAAGCGGCGGTAGAACTCACCAATACCCGATGAGGCCTGAAGCTGAAGATTGTGCATTCTATCTTAAGACTGGAACTTGCAAATTTGGGTTTAATTGCAAGTTTAATCATCCTCTTAAGAGGAAAAACCAGGCTGTTAAAGAGAAGACAAGAGAAAGAGAAGAAGCAGGAGAAAGATCAGGGCAGACAGAATGCAAGTATTATCTAAAGTCAGGAGGTTGTAAGTTTGGAAAGGCTTGTAAATTTAACCACACAAGGGGAAAATGTTCAGCAGCCCCTATTTTAGAGCTTAACTTTCTTGGCCTGCCTATTCGTCTGGGAGAGAAAGAGTGCCCCCATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAATTCAATCATCCTGATCCTAGTGCTGTTGGAGGAACTGATCCTCCTTCGGGATATGGTAATGGTGGGGCCATTTCATTACAAGGTGTATCGCAGCCATCTGTACCCTCTTGGTCTTCGCCAAGATCATTAAATGAAACTGCTTCTTTTGTGCCAATGATGATTCTGCCTAGTCAAGGTGTTTCTCCCCAAAGTTCTGAATGGAATGGGTATCAGGCGCCAGTCTACCTATCTGAGAGGAGTATGCATCCACCATCTCCATATGTCATGAACAATCCAGCAATAGAAACAAATGTTTATATGCATCATCAAAAGCAGATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGTTACTTCTTAAAAACTGGGCATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAACCGTACTGCAAGACCTCCATGCACCCTCAGTGACAAGGGTCTGCCTTTGAGACCTGATCAGAGTGTCTGCTCGCACTACAGTCGCTACGGAATTTGCAAATTTGGGCCATCTTGTAAGTTTGACCACCCAATAAACCCATTGCAGTCAACTATGGCTGGACTTGATCAGGAATCCTCCTACACAAAATCTGCTAATATGGAAGTGACTGAGATGACTGGAAGTGGAGGTGCAAGTGATGCTTCAATTCAGCAGCCTGTGTAA 1488 0.4402 MDPSESDSTAVSNATKNTELGLQSAPSFPSSHHDPESSDLNHRDEAEALQEELQNKLDLKDKDEGDEKKNDKEDAEFNDREEVYGKAGTGESDKEVFDEDNWNWNGNEDNSWTENANDGENDKFGLDDVTVGDEVEKNDEESGGRTHQYPMRPEAEDCAFYLKTGTCKFGFNCKFNHPLKRKNQAVKEKTREREEAGERSGQTECKYYLKSGGCKFGKACKFNHTRGKCSAAPILELNFLGLPIRLGEKECPHYMRTGSCKFGANCKFNHPDPSAVGGTDPPSGYGNGGAISLQGVSQPSVPSWSSPRSLNETASFVPMMILPSQGVSPQSSEWNGYQAPVYLSERSMHPPSPYVMNNPAIETNVYMHHQKQMQVEEFPERPGEPECSYFLKTGHCKFKSNCKFHHPKNRTARPPCTLSDKGLPLRPDQSVCSHYSRYGICKFGPSCKFDHPINPLQSTMAGLDQESSYTKSANMEVTEMTGSGGASDASIQQPV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0681 495 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Dere14g0681 495 MobiDBLite consensus disorder prediction 103 118 - -
Dere14g0681 495 ProSiteProfiles Zinc finger C3H1-type profile. 152 180 IPR000571 GO:0046872
Dere14g0681 495 SMART c3hfinal6 381 408 IPR000571 GO:0046872
Dere14g0681 495 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Dere14g0681 495 SMART c3hfinal6 426 453 IPR000571 GO:0046872
Dere14g0681 495 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Dere14g0681 495 SMART c3hfinal6 152 179 IPR000571 GO:0046872
Dere14g0681 495 ProSiteProfiles Zinc finger C3H1-type profile. 426 454 IPR000571 GO:0046872
Dere14g0681 495 MobiDBLite consensus disorder prediction 1 34 - -
Dere14g0681 495 MobiDBLite consensus disorder prediction 35 101 - -
Dere14g0681 495 Gene3D - 189 275 - -
Dere14g0681 495 SUPERFAMILY CCCH zinc finger 203 228 IPR036855 GO:0046872
Dere14g0681 495 Coils Coil 179 199 - -
Dere14g0681 495 MobiDBLite consensus disorder prediction 290 307 - -
Dere14g0681 495 Gene3D - 425 479 - -
Dere14g0681 495 Gene3D - 362 422 - -
Dere14g0681 495 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 271 IPR000571 GO:0046872
Dere14g0681 495 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 156 178 IPR000571 GO:0046872
Dere14g0681 495 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 202 224 IPR000571 GO:0046872
Dere14g0681 495 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 428 452 IPR000571 GO:0046872
Dere14g0681 495 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 383 408 IPR000571 GO:0046872
Dere14g0681 495 SUPERFAMILY CCCH zinc finger 386 410 IPR036855 GO:0046872
Dere14g0681 495 SUPERFAMILY CCCH zinc finger 246 273 IPR036855 GO:0046872
Dere14g0681 495 SUPERFAMILY CCCH zinc finger 427 457 IPR036855 GO:0046872
Dere14g0681 495 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Dere14g0681 495 Gene3D - 120 188 - -
Dere14g0681 495 PANTHER PROTEIN PHOSPHATASE RELATED 7 459 - -
Dere14g0681 495 MobiDBLite consensus disorder prediction 1 121 - -
Dere14g0681 495 ProSiteProfiles Zinc finger C3H1-type profile. 381 409 IPR000571 GO:0046872
Dere14g0681 495 Coils Coil 43 66 - -
Dere14g0681 495 MobiDBLite consensus disorder prediction 277 307 - -
Dere14g0681 495 SUPERFAMILY CCCH zinc finger 150 180 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0681 Dere-ChrDere14 7225299 7229387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0681 377 494 C2H2 Transcription Factor Family AT3G02830 40.336 3.58e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere14g0681 zf-CCCH 5.9e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0681 14 7225299 7229387 Dere14g0681 14 7225299 7229387 ECH