Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0676 ATGACCACCCTTTCCCTCCCTCTGCTCTTCTCTCTCTTCTCTGTTCTCACCATAACCCTCATTTCCTCCAGACCCCTCCAAGACCCTGAATTGGTAGTACAAGAGGTAAACAGGAAAATCAATGCTTCTATGCCGAGGAGGAACTTGGGGTACCTCTCCTGTGGGAGTGGCAACCCCATTGACGATTGCTGGAGGTGTGACCCCGACTGGGAGAACAACAGGCAGAGGCTAGCCGATTGTGCAATTGGGTTCGGGAAGAATGCGGTTGGGGGTAAGGATGGTCAGATTTACGTGGTGACCGATGCCGGCGACGACGACCCCGTGAACCCCAAGCCGGGGACTCTACGGTACGCCGTGATCCAGGACGAGCCGCTATGGATCACATTTGCCAGAGACATGGTGATCCAGCTGAAGGAAGAGCTGATTATGAACTCCTTCAAGACCATCGACGGTAGAGGCGCGAGTGTGCACATTGCGGGTGGTCCATGCATTACTATACAGTACGTGACCAACATTATAATCCACGGGATAAACATCCATGACTGTAAGCAAGGCGGGAACGCTATGGTGAGGGACTCCCCACGGCACTACGGGTGGAGGACAGTATCGGACGGCGATGGCGTGTCCATCTTCGGAGGAAGCCACATATGGGTGGACCATTGCTCTTTGTCAAATTGTAACGATGGGTTGATCGACGCGATTCATGGGTCCACCGCCATTACCATCTCCAATAATTACATGACTCACCACGACAAGGTCATGTTATTGGGTCACAGCGATTCCTATACCCAAGACAAGGACATGCAAGTCACTATTGCTTTTAACCACTTCGGAGAAGGGCTCGTTCAAAGAATGCCAAGATGTAGGCTTGGATATTTCCATGTGGTGAACAATGACTACACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCTACCATCAATAGCCAAGGCAACAGATTCGTGGCACCCGATGACAGATTCAGCAAAGAAGTGACGAAGCATGAGGATGCACCAGAGAGTGAGTGGAAGAGCTGGAACTGGAGGTCAGAAGGAGACTTGCTAGTCAACGGTGCATTTTTCACGGCATCAGGTGCAGGAGCCTCGTCGAGCTATGCAAGGGCTTCTAGTTTAAGTGCAAGGCCATCTTCAGTTGTCGGTTCGATAACGATGGGTGCGGGTGCACTTAACTGTAGGAAGGGTTCTCGTTGCTGA 1221 0.5152 MTTLSLPLLFSLFSVLTITLISSRPLQDPELVVQEVNRKINASMPRRNLGYLSCGSGNPIDDCWRCDPDWENNRQRLADCAIGFGKNAVGGKDGQIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWITFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKSWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSVVGSITMGAGALNCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0676 406 Gene3D - 57 399 IPR012334 -
Dere14g0676 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Dere14g0676 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Dere14g0676 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Dere14g0676 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Dere14g0676 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Dere14g0676 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Dere14g0676 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Dere14g0676 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Dere14g0676 406 SUPERFAMILY Pectin lyase-like 42 401 IPR011050 -
Dere14g0676 406 SMART amb_all 132 329 IPR002022 -
Dere14g0676 406 FunFam Pectate lyase 57 399 - -
Dere14g0676 406 Pfam Pectate lyase 141 323 IPR002022 -
Dere14g0676 406 PANTHER PECTATE LYASE 18-RELATED 26 404 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0676 Dere-ChrDere14 7177143 7178671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0676 4 406 Polysaccharide Lyase AT5G63180 81.481 0.0 681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0676 14 7177143 7178671 Dere14g0676 14 7177143 7178671 ECH
Dere03g0137 03 4850259 4851757 Dere14g0676 14 7177143 7178671 ECH