Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0663 ATGTCTGTCTCTTCTGTACCTGCCATTAAGACCCTGGCAATGGCAGAATCATGCCTACTTTCTTTGCCCTCACTCTTCCACAGAAAAACCAGACATCCCCATTTCTCAATTCCTTCTAAACCCCTTAAGCTGCAGCTCCCATGTTCCAACTCTTCACTCTTTTTACCATCTCTGTCGCTCATCAGGAAAAACCATCCTTCCTCTATATTGACATTTGTAGCACAGACATCGGATTGGGCCCAGCAAGAAGAGGAGAACACAGTTGCCGTTGAAGAAGATGAACCCACATGGGAAAATCAGGAGGGCGAAGCTACCGAAGTTCGCCTTTCGGATTGGGAACCTGATGGCGAAGACGCAGTAGTTGATGGTAGCGAGGGCGAAGGAGAGAGTGGTGAAGATGGGGTTTTTGAGGAGAGGGAATTTGTAGAACCCCCTGAAGATGCTAAAATCTATGTTGGCAACTTGCCTTACGATGTAGATAGCCAAAAATTAGCCATGCTTTTTGAGCAGGCTGGAACAGTTGAAATTGCCGAGGTAATTTATAATAGGGAGACTGACCGGAGTCGTGGGTTCGGATTTGTAACGATGAGTACAGTTGAAGAAGCCGACAAGGCTGTGGAGAAGTTCAGCCGCTACGATTTAGATGGAAGACTGCTGATTGTTAATAAGGCTGCTCCAAGAGGATCACGCCCTGAACGTCCACCTCGTGCCTTCGAACCTGCTTTCAGAGTCTATGTTGGCAACTTGCCATGGGATGTTGATAATGCTCGCCTGGAGCAAATCTTCAGCGAACATGGTAAGGTTGTGAGCGCTCGGGTAGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTGACAATGGCCAGTGAGACTGAAATGAATGATGCTATTGCTGCGCTTGATGGTCAGAATTTGGATGGGAGAGCAATGAGAGTGAATGTCGCTGAGGAAAGGCCCAGGCGTAGCTCCTTTTGA 984 0.4787 MSVSSVPAIKTLAMAESCLLSLPSLFHRKTRHPHFSIPSKPLKLQLPCSNSSLFLPSLSLIRKNHPSSILTFVAQTSDWAQQEEENTVAVEEDEPTWENQEGEATEVRLSDWEPDGEDAVVDGSEGEGESGEDGVFEEREFVEPPEDAKIYVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEKFSRYDLDGRLLIVNKAAPRGSRPERPPRAFEPAFRVYVGNLPWDVDNARLEQIFSEHGKVVSARVVYDRETGRSRGFGFVTMASETEMNDAIAALDGQNLDGRAMRVNVAEERPRRSSF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0663 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 320 IPR000504 GO:0003723
Dere14g0663 327 SMART rrm1_1 149 222 IPR000504 GO:0003723
Dere14g0663 327 SMART rrm1_1 243 316 IPR000504 GO:0003723
Dere14g0663 327 FunFam 31 kDa ribonucleoprotein, chloroplastic 74 231 - -
Dere14g0663 327 SUPERFAMILY RNA-binding domain, RBD 234 325 IPR035979 GO:0003676
Dere14g0663 327 FunFam 31 kDa ribonucleoprotein, chloroplastic 232 326 - -
Dere14g0663 327 MobiDBLite consensus disorder prediction 116 134 - -
Dere14g0663 327 PANTHER OS02G0815200 PROTEIN 28 323 - -
Dere14g0663 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 313 IPR000504 GO:0003723
Dere14g0663 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 218 IPR000504 GO:0003723
Dere14g0663 327 SUPERFAMILY RNA-binding domain, RBD 144 236 IPR035979 GO:0003676
Dere14g0663 327 CDD RRM2_NsCP33_like 243 318 - -
Dere14g0663 327 Gene3D - 74 229 IPR012677 -
Dere14g0663 327 Gene3D - 230 326 IPR012677 -
Dere14g0663 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 226 IPR000504 GO:0003723
Dere14g0663 327 MobiDBLite consensus disorder prediction 91 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0663 Dere-ChrDere14 7075700 7077671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0663 137 324 Eukaryotic Initiation Factors Gene Family AT3G16380 35.859 7.21e-25 103
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0672 03 10878374 10880971 Dere14g0663 14 7075700 7077671 CCT
Dere03g0672 03 10878374 10880971 Dere14g0663 14 7075700 7077671 ECH
Dere14g0663 14 7075700 7077671 Dere14g0663 14 7075700 7077671 ECH