LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g0633	ATGAGTGCTCCGATGGAGGTTACCCTGCAAAATCCCCTAATAGACGAAATCTCCGAACAAAATGGTGTCGCTGCTCAAGACTCAGCTCCTTCTCCTATTCTTTCTGAAGAGAAAGTTCTCGTCTCTGTCGAAGTATGTTTAAAACCTTCCAGTACAGCTCGGATCGCGGATGTCCGTTCAGCCGTCGAGAGGATGCTTGAACATAGGTGTCTGAGCTATATTGGTGGACCCATTCCTGTGCCTCTTGATGATACTTTTCTTTCAGAAAACGTGCAAAGAATCTGTATCTGTGATACCGATGAATCAATGAGCGACCATAACATTCTTTTGTTCTGGCAAGTCAAGCCTGATGTGCATGTCTTTCAGCTAAGTGAAGAAGGACCATGTGAGGATATAAGCACTGATGGCCAACTTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTGATATATGAATCTGGTCTCAAGCAAAGGTTGTTAAGATATGCAGCAAGTGCTTTGCTCTTTACTGAAAAGGGTGTTGATCCATTTCTTGTTTCATGGAACCGAATTATTCTTTTACATGGACCTCCAGGGACTGGAAAGACATCTTTATGTAAAGCATTGGCACAAAAACTATCTATTCGATTCAATCAAAGATATCCACAGTGCCAGCTGATTGAAGTTAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGCGGCAAGCTGGTTGCAAAGCTTTTTCAAAAGATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTTGAAAGCCTGGCTGCCGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATAATTCTAACTACATCCAACATAACTGCTGCTATCGATATCGCTTTTGTTGATCGAGCTGATATCAAAGCATACGTTGGTCCACCAACTCTCCAAGCTCGCTATGAAATTCTGAAGTCATGCTTGCAGGAATTGATGCGCACAGGGATCTTGGAGAGTTTACAGGACTGTAAGAACATCACGCTTCCAAATTATGCAAGTGCGAAGGAGAGGTTGAACACACCTGAGAATTATGAGGCTGCTACAGCCATTGAACTTTGTAAACAACTACTTGAAACCGCAGGGGCATGTGAGGGAATGAGCGGAAGGTCTTTGAGAAAGCTTCCATTCCTGGCACATGCTTCCCTTGTCAATCCTTCTGATTGCAACCCTATTAAGTTCTTATGCACCATGATTGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCCGACTGA	1371	0.423	MSAPMEVTLQNPLIDEISEQNGVAAQDSAPSPILSEEKVLVSVEVCLKPSSTARIADVRSAVERMLEHRCLSYIGGPIPVPLDDTFLSENVQRICICDTDESMSDHNILLFWQVKPDVHVFQLSEEGPCEDISTDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILKSCLQELMRTGILESLQDCKNITLPNYASAKERLNTPENYEAATAIELCKQLLETAGACEGMSGRSLRKLPFLAHASLVNPSDCNPIKFLCTMIETAKRERSELPD	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g0633	456	FunFam	pachytene checkpoint protein 2 homolog	134	356	-	-
	Dere14g0633	456	Pfam	ATPase family associated with various cellular activities (AAA)	194	339	IPR003959	GO:0005524\|GO:0016887
	Dere14g0633	456	SMART	AAA_5	190	342	IPR003593	GO:0016887
	Dere14g0633	456	CDD	RecA-like_Pch2-like	140	338	-	-
	Dere14g0633	456	PRINTS	ATP-dependent Clp protease ATP-binding subunit signature	194	212	IPR001270	GO:0005524
	Dere14g0633	456	PRINTS	ATP-dependent Clp protease ATP-binding subunit signature	308	322	IPR001270	GO:0005524
	Dere14g0633	456	Gene3D	-	137	358	IPR027417	-
	Dere14g0633	456	PANTHER	PACHYTENE CHECKPOINT PROTEIN 2	33	453	IPR044539	-
	Dere14g0633	456	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	146	420	IPR027417	-
	Dere14g0633	456	ProSitePatterns	AAA-protein family signature.	312	331	IPR003960	GO:0005524\|GO:0016887

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g0633	Dere-ChrDere14	6682435	6689925	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g0633	194	360	Calmodulin-binding Proteins	AT3G56690	28.994	4.08e-13	69.7

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere14g0633	14	6682435	6689925	Dere14g0633	14	6682435	6689925	ECH