Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0627 ATGTGCTCAGCCACAGGAGAAGGAGAAGAGACGAAAATGACGACGAGGTTCAAGAAGAACAGGAAGAAGAGAGGACATGTGAGCGCTGGCCATGGCCGTATCGGCAAGCACCGGAAGCACCCGGGAGGTCGAGGTAACGCCGGAGGTATGCACCACCACCGAATCCTGTTCGACAAGTACCATCCTGGTTACTTCGGTAAGGTGGGAATGCGTTACTTTCACAAGCTTCGCAACAAGTTTTACTGCCCCATTGTCAACATCGACAAGCTTTGGTCCTTGATTCCTCAAGAGGTGAAGGACAAAGCATCCAAGGACAGCGCCCCCTTGATCGATGTCACTCAGTACGGCTACTTCAAGGTTTTGGGTAAAGGAGTTTTGCCTGAGAACAAGCCTCTGGTTGTGAAGGCCAAGCTTGTGTCGAAGATTGCCGAGAAGAAGATCAAGGAGGCTGGAGGAGCCGTCGTCCTCACAGCTTAA 477 0.5199 MCSATGEGEETKMTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDSAPLIDVTQYGYFKVLGKGVLPENKPLVVKAKLVSKIAEKKIKEAGGAVVLTA 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0627 158 PANTHER 60S RIBOSOMAL PROTEIN L27A 13 158 - -
Dere14g0627 158 Hamap 50S ribosomal protein L15 [rplO]. 13 157 IPR030878 GO:0003735|GO:0006412|GO:0015934
Dere14g0627 158 FunFam 60S ribosomal protein L27a 70 158 - -
Dere14g0627 158 Gene3D - 70 158 - -
Dere14g0627 158 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 40 155 IPR021131 -
Dere14g0627 158 MobiDBLite consensus disorder prediction 1 46 - -
Dere14g0627 158 MobiDBLite consensus disorder prediction 17 46 - -
Dere14g0627 158 ProSitePatterns Ribosomal protein L15 signature. 119 151 IPR001196 GO:0003735|GO:0005840|GO:0006412
Dere14g0627 158 SUPERFAMILY Ribosomal proteins L15p and L18e 18 157 IPR036227 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0627 Dere-ChrDere14 6635917 6636582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0627 13 158 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 89.041 2.03e-96 273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0718 03 11506466 11506906 Dere14g0627 14 6635917 6636582 CCT
Dere03g0718 03 11506466 11506906 Dere14g0627 14 6635917 6636582 ECH
Dere14g0627 14 6635917 6636582 Dere14g0627 14 6635917 6636582 ECH