Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0624 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAGCTGAGGAAAGGCTTATGGTCCCCTGAAGAAGACGAGAAGCTTTTCAATCACATAACTAGATTTGGTGTTGGCTGCTGGAGCTCCGTTCCAAAGCTAGCTGGACTTCAAAGATGTGGAAAGAGTTGTAGACTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGCATGTTCACGCAACAAGAGGAGGATCTTATCCTCAGTCTTCATGAAGTTCTGGGCAACAGGTGGGCTCAGATTGCAGCACAGTTACCAGGAAGAACAGATAACGAGATTAAGAACTTCTGGAATTCATGCTTGAAGAAGAAGTTGTTGAAGCAAGGGATTGACCCAACTACCCACAAGCCCCTTATTCAACCTCAAATAAAGGAGAAGAACAATAGCACAGAGACACCACCACTCTCTATGCACAATATGCCATTCTCTAACTTTGCCTTCTCACAGGGCACTCCTTTTCTTATTTGCGATTCAAATTACTGCGATGCAGCTGGGTTAACAGAAGCTTCAAGAGAAGATGAAATGTTCATGAGCAAGCCCGAATTGGACCCACTGTCCTATTATGACTCGTACTTGAGTACTCATTATCACTATGGAACTAGTTCAAGCTACGGGATGAGTTCAATGCCAAGTTTAACTAGTTCGGATCATAACAACTTGTCGGTAATGACGGAATTTTCAGAGAACAATTCGGCTTCAAAGATTAGTTCAAGCAATAACTCAAACTTGAACAGTTTGCAGATGAGCAGCGCGATGGAAAATGGAGGATTCTCGTCGTGGGAGGGAGAGAACAAGATGGACCCTTCCTTTCAGTTTCAAGTGAATGCCATAAAATCAGAGGAACTGATGATGAACGCATGTTCGTGGCAAGAAGGACAGCTGCAGACTCACAATTCAATAGATTTCAATTGCTATCCGTTAACGTCATTCTCACAAGATCTAACAGCAGCGAATTATGATGTATTCCAGCATATATGA 1011 0.4283 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFTQQEEDLILSLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLIQPQIKEKNNSTETPPLSMHNMPFSNFAFSQGTPFLICDSNYCDAAGLTEASREDEMFMSKPELDPLSYYDSYLSTHYHYGTSSSYGMSSMPSLTSSDHNNLSVMTEFSENNSASKISSSNNSNLNSLQMSSAMENGGFSSWEGENKMDPSFQFQVNAIKSEELMMNACSWQEGQLQTHNSIDFNCYPLTSFSQDLTAANYDVFQHI 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0624 336 Gene3D - 68 144 - -
Dere14g0624 336 CDD SANT 70 109 IPR001005 -
Dere14g0624 336 PANTHER MYB DOMAIN PROTEIN 55 1 288 - -
Dere14g0624 336 FunFam MYB transcription factor 11 67 - -
Dere14g0624 336 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere14g0624 336 FunFam Transcription factor MYB86 69 137 - -
Dere14g0624 336 CDD SANT 17 61 IPR001005 -
Dere14g0624 336 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dere14g0624 336 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere14g0624 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere14g0624 336 Gene3D - 11 67 - -
Dere14g0624 336 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dere14g0624 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere14g0624 336 SMART sant 13 63 IPR001005 -
Dere14g0624 336 SMART sant 66 114 IPR001005 -
Dere14g0624 336 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0624 Dere-ChrDere14 6558348 6559568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0624 1 141 MYB Transcription Factor Family AT1G57560 77.305 3.55e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere14g0624 Myb_DNA-binding 6.8e-13 CL0123