Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0619 ATGGCATCATCAAGCTCTTACTCATCTCCCTGTGCTGCCTGCAAATTCCTGAGGAGAAAATGCATGCCAGGTTGCATCTTCGCGCCTTACTTCCCACCCGAGGAGCCTCAAAAGTTCGCCAACGTGCACAAAATCTTCGGTGCTAGCAACGTGACCAAGCTCCTGAACGAACTCCTCCCTCACCAGAGAGAAGACGCCGTGAACTCCCTCGCCTACGAAGCAGAGGCGCGTGTGAGGGACCCAGTGTATGGGTGCGTGGGAGCCATCTCTTTCCTTCAGAGACAGGTCCAGAGGCTCCAGAAGGAGCTCGATGCTGCAAATGCCGATCTCATCCGCTACGCCTACAACGAAATCCCTCCTGCTGCTAATTCTCTCTCTGTGGTGCCACCTGGCATAGGAATCACGACTTCATCGCTTCAACTGCAACATATGCCTCAGAGGCAAAGGTCGTCGACTATGGAGTATATCAATGGAAGGATAGGCAGTAACACTGAAGCAACAGGAGGGGGCGGTGGGTTTTACAGGCAATTTCCTACGGCTTACAATTACTCTCTTCCTTATACTATTCCATGGGCTGATACGACTTCGGATGGCATCGATGAGGGAGCAGCAGCAGGAGGTGGAGGTAATTTGTAA 636 0.5236 MASSSSYSSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYAYNEIPPAANSLSVVPPGIGITTSSLQLQHMPQRQRSSTMEYINGRIGSNTEATGGGGGFYRQFPTAYNYSLPYTIPWADTTSDGIDEGAAAGGGGNL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0619 211 Coils Coil 89 116 - -
Dere14g0619 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 143 - -
Dere14g0619 211 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Dere14g0619 211 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0619 Dere-ChrDere14 6502528 6503163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0619 2 113 AS2 family AT5G63090 92.857 8.38e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere14g0619 LOB 3.9e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0727 03 11645383 11645940 Dere14g0619 14 6502528 6503163 CCT
Dere03g0727 03 11645383 11645940 Dere14g0619 14 6502528 6503163 ECH
Dere14g0619 14 6502528 6503163 Dere14g0619 14 6502528 6503163 ECH