Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0611 ATGAGGTCGAGACACGGCATGGATATCAACATAGGAGGACAAGTAGAGAAGGTAAATGGGAAAGAATTGAGTTACAATGAATTTGTGGTGAGGTACCTGGAGAAGAACCAACCCGTGGTGCTCACAGGACTAATAGACGATTGGAGGGCTTGCAGAGACTGGGTCACCAGTAATGGGCAACCCAACCTTCAGTTTTTCTCTTCGCATTTTGGGAATTCTAAAGTTCAGGTTGCAGATTGTGGCACTAGAGATTTCACGGATCAGAAGAGGGAGGAGATGTGTGTTTCAGATTTTATCGGACGTTGGCTGGAGGCTTCTTCAGTACAATATATTAATGAAAATCATAATAGTAATGGTCAGGGCTCCGTACTGTATTTGAAGGATTGGCACTTCGTCAAGGAGTATCCAGAGTATTTAGCATACATCACTCCAGTGTTCTTTCGTGATGATTGGCTCAACCTCTATCTTGACAACTATAGAATGCATACAGATCCTGACAGCTTTCAACAAAATAATGAAATATGTTGTTCTGACTATCGTTTTGTTTACATGGGGTTGAAAGGATCTTGGACTCCTCTTCATGCTGATGTTTTCAGGTCATACAGTTGGTCAGCAAATGTCTGCGGGAAGAAGAGATGGTTTTTTCTAGCTCCCCCTCAGAGTCATCTTGTATTTGACAGGAATATGAAAAGCTGTGTGTATAATATCTTTGCTCAAGTATGTGAATCAACATTTCCTGGCTTTAGAAAGGCTAGCTGGTTAGAATGTACGCAAGAAGCAGGTGAAATTATTTTTGTTCCCAGTGGATGGTATCATCAAGTTCAAAATCTGGAGGATACTATATCTATAAACCACAACTGGTTCAATGCCTTTAACCTCTCTTGGGTGTGGAATTTACTTTTGAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAAGTCTCTGCCAACGCAATCTTTTTGCTAACACAGGGATGAACTTTTATGACTTCTTTACTTTCATATCATGCTTTACCCTGGCCAACTTGGCCTTGCTCTGTCATCTAAGTGGAAAATATGGAAGCCCCCCTGAAAGTTCATCAACTGTTACTCAACATTTAGTTTTGAATCTTGGATCCATGAGAAAGGTTGCATCAGAGATGAAACGGATGCATGCTCTGGAAGGACATCGTGATTTCTTCCTGGACATTATCAAAACATTAGAAGATCCTAGGTTTTCCAAATTGTGTGCAGGTTTGAGAAAAACATACATGACGATACATGAACAACCTTATTTGTCTTCTGGCTTTGAAAATGCAGCAGTTGATTATCTAATGGGCCTTAATGTTTTGAAAGCACACACCTCCTCTCAGGTCTGCACACCCGAAGATCTCATCAAACTTATAGACAATGCTGTTGCAGAACTTGGTGACAAATACACTAAGGGGCTGTCTGCAGTACATGTTGGCTGA 1479 0.4084 MRSRHGMDINIGGQVEKVNGKELSYNEFVVRYLEKNQPVVLTGLIDDWRACRDWVTSNGQPNLQFFSSHFGNSKVQVADCGTRDFTDQKREEMCVSDFIGRWLEASSVQYINENHNSNGQGSVLYLKDWHFVKEYPEYLAYITPVFFRDDWLNLYLDNYRMHTDPDSFQQNNEICCSDYRFVYMGLKGSWTPLHADVFRSYSWSANVCGKKRWFFLAPPQSHLVFDRNMKSCVYNIFAQVCESTFPGFRKASWLECTQEAGEIIFVPSGWYHQVQNLEDTISINHNWFNAFNLSWVWNLLLRDYNEAKEYIEDIKDICDDFESLCQRNLFANTGMNFYDFFTFISCFTLANLALLCHLSGKYGSPPESSSTVTQHLVLNLGSMRKVASEMKRMHALEGHRDFFLDIIKTLEDPRFSKLCAGLRKTYMTIHEQPYLSSGFENAAVDYLMGLNVLKAHTSSQVCTPEDLIKLIDNAVAELGDKYTKGLSAVHVG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0611 492 Gene3D Cupin 2 289 - -
Dere14g0611 492 SMART cupin_9 124 304 IPR003347 -
Dere14g0611 492 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 16 341 - -
Dere14g0611 492 Pfam Cupin-like domain 27 290 IPR041667 -
Dere14g0611 492 ProSiteProfiles JmjC domain profile. 132 304 IPR003347 -
Dere14g0611 492 FunFam JmjC domain-containing protein 4 9 289 - -
Dere14g0611 492 SUPERFAMILY Clavaminate synthase-like 6 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0611 Dere-ChrDere14 6398049 6401580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0611 13 296 Glycosyltransferase AT1G78280 24.315 1.06e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dere14g0611 Cupin_8 6.7e-25 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0611 14 6398049 6401580 Dere14g0611 14 6398049 6401580 ECH