Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0589 ATGAACGATTGGCATATGGTTCTTGTCTTTCGATTCTACTTAGTTTTTCGCTTTTACGAAGATGATGCATCTGATATCAAGTGGTCTAATTTAAAGGAGATAGCTTCAAACGCTGAAGCCAGCTCTTACCTTCAATATATTTCTGTTACTCTTTCTGCCATGGAACTTCACACAAAGCTCAGAGAAACCTCTTATACCTCACAGCTGATGCATCTTCAAGAAAACTACCTGAAGCCTAATATGAAATTAGATGAGTATCCTTCCGGGGTTCCTAATTCATCACAGGGTTTCTTGCAAGATTTTAATTACCATATTGATCCTCACTTTCACCAAAATGGGTCTTCTTCATCCAATCCAGTTTTTGGGGTCCACACTATGACTTTCGATTCTTCAGATAATTTTGATGCTCATGAGTGCGAGCCTTTTGCTGAGAATAATAATGGTAGCAGCATTGGGCATGCTCAGATTACGGATAATTTCCAATATAAATCTAATTATAGCTTGAACCTTTCTCAGAGAAATCAAGTGGATATGACCCAAAGCTATGTGCTCTTCAGTTCTCAGGAAACGAAGCCTGTGAATTTTGTTGTACCAGATGAAGTCTCATGCATATCCCCTTCTTCGGCGAATTATCACAAAAGAGTTGGCCTCAATAGGAAAAGTAATAGGGCATCATCTTCTCTAACCACTAGAAGGACGAGTTACAATCTTCGCAAGAACTCCAAAGCTGTAAAGGGACAATGGACCATTGAAGAAGATAGGTTGTTGATTGAACTTGTGGAACAATATGGGGTGAAAAAGTGGTCTCACATTGCTCAGATGTTGCCCGGAAGAATAGGCAAACAGTGCAGAGAAAGATGGCATAATCATCTAAAGCCTGACATAAAGAAGGAGACATGGACAGAAGAAGAGGATAAAATACTGATAGAAGCGCATGGAGAGATAGGAAACAAATGGGCAGAGATAGCTAAGAGATTGCCAGGAAGAACAGAAAACTCCATAAAGAACCATTGGAATGCAACAAAGAGAAGGCAATACTCTAGGAGAAAATGTCGCTCAAAGTACCCAAGAGGCTCTCTTCTGGAGGAATATATCAAAAGCTTGAACCTACACCAAAACCCACCAATAGACTATCGCAAAAGATCATCATCTTCTGATGCTAATACCACTACAAATACGAGCACAACTATAAGCAAAGAAGCATCTCAGCTAATTTGTGCTTCCAATGTGGATGGATTGGTGCCGAGTTATGAGTTTAAGGAGGCCCAAGATTTTTGTTTTGACGAGAGCATGTTTCAAGAAGGAGAGTGCAACAATATTGATTCTGTGCTGCTAGATGATGATGTGGGTGATGAGAAAGGTTTTGAAGGAAAAATGGCATCAATGGTAGGGTTTGAAGTTAAGAAGGAGCTGGACTTGGTGGAAATGATATCTCAGGTCAATCAAGTTATGCATATGTAG 1461 0.399 MNDWHMVLVFRFYLVFRFYEDDASDIKWSNLKEIASNAEASSYLQYISVTLSAMELHTKLRETSYTSQLMHLQENYLKPNMKLDEYPSGVPNSSQGFLQDFNYHIDPHFHQNGSSSSNPVFGVHTMTFDSSDNFDAHECEPFAENNNGSSIGHAQITDNFQYKSNYSLNLSQRNQVDMTQSYVLFSSQETKPVNFVVPDEVSCISPSSANYHKRVGLNRKSNRASSSLTTRRTSYNLRKNSKAVKGQWTIEEDRLLIELVEQYGVKKWSHIAQMLPGRIGKQCRERWHNHLKPDIKKETWTEEEDKILIEAHGEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSRRKCRSKYPRGSLLEEYIKSLNLHQNPPIDYRKRSSSSDANTTTNTSTTISKEASQLICASNVDGLVPSYEFKEAQDFCFDESMFQEGECNNIDSVLLDDDVGDEKGFEGKMASMVGFEVKKELDLVEMISQVNQVMHM 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0589 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 295 IPR017930 -
Dere14g0589 486 Gene3D - 244 296 - -
Dere14g0589 486 CDD SANT 299 342 IPR001005 -
Dere14g0589 486 PANTHER MYB PROTEIN-RELATED 245 393 - -
Dere14g0589 486 ProSiteProfiles Myb-like domain profile. 292 342 IPR001005 -
Dere14g0589 486 SMART sant 244 293 IPR001005 -
Dere14g0589 486 SMART sant 296 344 IPR001005 -
Dere14g0589 486 MobiDBLite consensus disorder prediction 376 395 - -
Dere14g0589 486 Pfam Myb-like DNA-binding domain 245 291 IPR001005 -
Dere14g0589 486 Pfam Myb-like DNA-binding domain 297 339 IPR001005 -
Dere14g0589 486 SUPERFAMILY Homeodomain-like 244 338 IPR009057 -
Dere14g0589 486 FunFam Transcription factor MYB119 298 362 - -
Dere14g0589 486 ProSiteProfiles Myb-like domain profile. 240 291 IPR001005 -
Dere14g0589 486 CDD SANT 248 291 IPR001005 -
Dere14g0589 486 FunFam Transcriptional activator Myb isoform A 244 297 - -
Dere14g0589 486 MobiDBLite consensus disorder prediction 374 395 - -
Dere14g0589 486 Gene3D - 298 350 - -
Dere14g0589 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 296 346 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0589 Dere-ChrDere14 6185341 6190072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0589 168 455 MYB Transcription Factor Family AT4G18770 52.234 3.46e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere14g0589 Myb_DNA-binding 8.2e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0589 14 6185341 6190072 Dere14g0589 14 6185341 6190072 ECH