Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0561 ATGGCTATCAGAGGCGTCGATTTTAAATGGTACGATGGGTTTTTCTTGTCGATGCTTGCCACCAGCGTAGTTATTGTGGCAATTAATTGGAAGCGCTACCATTCTTGTACATACCCGTTGCACATATGGATTGTGGTTGACTACACTGCTGTGTTTATCTTTCGGTTGATGATGTTTGTTGATAATGGACTTTCTGCCGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGATATGCTCGCTTCTGTGGAAGAGTTGCAGTCCTTTCAATCCTTGTTTTGCTTCTGTATCCATTTCTTTGGGCTTGGACTATAATTGGTACCCTGTGGTTTGGCAGTGCCAGGAACTGCTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTGCTTTGCATTGCTTGCATGTCATTAGGGAAGTGGTTGACCCGAAGACAAGCACACTTGTTACGTGCCCAGCAGGGTATTCCTGTATCTGAATATGGAGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAGGAAACAAGAGGCATGGGCCAAGATGCTGGTGCATATCATCCTGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCATTAATTCAGGAACTTCCAAAGTTCAGGTTAAAGGCTGTTCCAACCGACTGTAGTGAATGCCCCATCTGCTTAGAAGAATTCCATGAGGGGAATGAGGTCCGTGGCCTGCCATGCGCTCACAACTTTCATGTTGAATGCATTGATGAGTGGCTTCGACTTAATGTGAAATGTCCTCGATGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCGCTGTCCAATCTCCGCCCTGAGTCAGAACGATCCTCTGCTAGTGTTGTGACAACAACCAGATACGTGAGAGGCCAACCTTCTAGTCAGAGTTATTTGTTGAGATTACAAGGTCTTCTCCGCCCAGTGCATTTGGAAATCGCTGGGCCAGGTGTTGAGGTTGATAATGCTTTGGAAAATGCCGAGAATGGTGGTGTGCCTGCTGTAACTCGAAATGCATCAAGTGGAGCACTAGGCCCTTCAGTTGAATGCATGCCTGTCAGTCTCTCCTCTGCACAAAATTAG 1143 0.4681 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTAVFIFRLMMFVDNGLSAGMGLDFGWQQRYARFCGRVAVLSILVLLLYPFLWAWTIIGTLWFGSARNCLPEEGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVHLEIAGPGVEVDNALENAENGGVPAVTRNASSGALGPSVECMPVSLSSAQN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0561 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Dere14g0561 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Dere14g0561 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Dere14g0561 380 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Dere14g0561 380 SMART ring_2 235 275 IPR001841 -
Dere14g0561 380 SUPERFAMILY RING/U-box 217 284 - -
Dere14g0561 380 Pfam Ring finger domain 234 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0561 Dere-ChrDere14 5723404 5727232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0561 58 360 C3H Transcription Factor Family AT3G47990 74.183 1.84e-163 458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0561 14 5723404 5727232 Dere14g0561 14 5723404 5727232 ECH