Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0553 ATGATTCATGCATCCAATCAATCAGGCCGCCGTATTCTGTCATTCCCGGCGGTTCATCCCTGCGAAGGCGTATCTCCGGCGACTCTTCTCTCTTCTTTAATTTCTCTCTCTCAGGCTATATGCAGTTTCCAATCCAAGTTCTTCGCCACCCAACGTCGAAACTCCAGAGAAACAATTCGCCAAGTCGGTGTCATCCGCCTCTTCCTCGAGGAAATTCGAGACTGTGGTGTCCCTATAAGGGATTCTATTGTTCTCTGCTTCTCCGAACTTCACCTCAGTTTCCAAAAAATCCACTTCTTACTCTCAGATTGTACTCGCGAAGGTGCTCGGCTATGGATGCTAATGAAATCAGAGCATGTTGCCAATCAATTCAGGGTTCTGATTCGGGCGGTAGCCACTGCTCTTGACGTCTTGCCTCTGCATCGTATCGAGGTTTGTGATGAAGTAAAAGAGGTAGTGGAATTAGTAGCCAAGCAAGCTCGGAAAGTGAAGGTCGAACTAGAGCCACACGACGAGCGCACGGCCAAGCAAGTCCATTTGGTTTTGCATCAGTTAGAGAGAGGAATCGAACCCGACTTGAGTACCATGAAGCGAATTTTGGACAACCTAGAAATCAAGAATTGGAATGATTGTAATAAAGAGATCAAATTCTTGGAAGCCGAAATCAGCTTTAGCTGCTCCGGCGGTGATGAGAGGGAGGTTCCTTTTTCGAGTAGTTTAGTTGCGTTTTTATGCTATTGCAGGGTAGTAATATTCGAAACTCTAGATTTTCAACACACCACCAGTGATCCATCGGAGGCAAGGTGCAGCACACCGATGATTAACTTCATAAACCCGCAGGACTTTCGGTGTCCAATTTCTTTACAGCTAATGACTGATCCTGTGACTGTATCGACGGGTCAGACTTACGATCGAGCTTCCATTCAGAAATGGCTGAAAGCTGGAAACAGGATATGCCCCAAAACAGGGGAGAAGCTCACAAACACTGATCTCGTCCCAAACACAACCCTCAGAAATCTAATCCAACAGTTCTGTGCCGATAACGGAGTTTCCACCGCCAAGTCCGATCACCTGAGTCGCGACATAACGAGAACCGTCGTCCCTGGTAGTACAGCTTCAGCACACGCCATGCAATTTCTTTCGTGGTTCATTGCTCGGAGGCTCGTGTTCGGAACAAATGACCAGAAAAACAAGGCAGCTTATGAGATTCGTTTGCTTTCGAGGTCCAACATTTTCAACAGAGCATGTTTGATTGAAGTTGGAACAGTACCCTCATTGCTAAATCTCCTGGATACAAAGGATAAATCAACGCAAGAGAACGCAATCTCTGCTCTTTTGAAGTTGGCAAAGCATGCCAATGGACAGGAAATTATAATGGAAAGTGGGGGACTCACCCGAATCCTCATGGTTCTCAAAAGGGGAATAACTATAGAAGCACGTCGAATCGCAGCTGCTACTATATTTTACCTTTCTTCCACCGAAGAAAACAGGAAAATAACTGGAGAAAACCCAGAAGTAATCCCAGCTTTGGTAGAACTAATCAAGGAAGAAACAACCACTTACGGGAAAAAGAATGCCGTGGTTGCCATTTTCGGGCTTCTCTTGCTTCCTCAGAATCATCAGAAAGTGCTGGAGGCTGATACTGTTCCTGTGTTAGTCAGTATATTAGCTTCCTCAGAAAAATCTGACCTTACCGCAGATTGTTTAATGGTTCTCTCAGCCTTGGCGGAGAATGTAGAGGGAGCAAAAGCTATATCACAAGCTTCTGCTTTGCCTTTGATCATTGGGATGTTGCAATCATTAACATCGCGTGCAGGGAAAGAGCACTGCGTGTCAATTCTGGTGTCACTGTGCGTGCATGTAGGAGCAGAGGTGGTGGGTGTTCTAGCCAAGGATGCTTCATTGATGCCTCAGCTTTACTCGCTTCTCACCGATGGTACTTCTCATGCAGCCAAGAAAGCACGTGCCCTCATCAAAGTTCTACAGGAATTCAACGACACAAGAACTTCTAGGTGGGTTGATTCGTCGGCCCTACGGGAACGTTCCGTTCGCATTTGA 2058 0.4626 MIHASNQSGRRILSFPAVHPCEGVSPATLLSSLISLSQAICSFQSKFFATQRRNSRETIRQVGVIRLFLEEIRDCGVPIRDSIVLCFSELHLSFQKIHFLLSDCTREGARLWMLMKSEHVANQFRVLIRAVATALDVLPLHRIEVCDEVKEVVELVAKQARKVKVELEPHDERTAKQVHLVLHQLERGIEPDLSTMKRILDNLEIKNWNDCNKEIKFLEAEISFSCSGGDEREVPFSSSLVAFLCYCRVVIFETLDFQHTTSDPSEARCSTPMINFINPQDFRCPISLQLMTDPVTVSTGQTYDRASIQKWLKAGNRICPKTGEKLTNTDLVPNTTLRNLIQQFCADNGVSTAKSDHLSRDITRTVVPGSTASAHAMQFLSWFIARRLVFGTNDQKNKAAYEIRLLSRSNIFNRACLIEVGTVPSLLNLLDTKDKSTQENAISALLKLAKHANGQEIIMESGGLTRILMVLKRGITIEARRIAAATIFYLSSTEENRKITGENPEVIPALVELIKEETTTYGKKNAVVAIFGLLLLPQNHQKVLEADTVPVLVSILASSEKSDLTADCLMVLSALAENVEGAKAISQASALPLIIGMLQSLTSRAGKEHCVSILVSLCVHVGAEVVGVLAKDASLMPQLYSLLTDGTSHAAKKARALIKVLQEFNDTRTSRWVDSSALRERSVRI 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0553 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 353 IPR013083 -
Dere14g0553 685 SUPERFAMILY RING/U-box 279 351 - -
Dere14g0553 685 FunFam RING-type E3 ubiquitin transferase 358 672 - -
Dere14g0553 685 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Dere14g0553 685 CDD RING-Ubox_PUB 279 331 IPR045210 -
Dere14g0553 685 PANTHER U BOX DOMAIN-CONTAINING 82 661 - -
Dere14g0553 685 FunFam RING-type E3 ubiquitin transferase 277 352 - -
Dere14g0553 685 Gene3D - 369 679 IPR011989 -
Dere14g0553 685 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Dere14g0553 685 Pfam U-box domain 279 348 IPR003613 GO:0004842|GO:0016567
Dere14g0553 685 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Dere14g0553 685 Pfam Armadillo/beta-catenin-like repeat 413 449 IPR000225 GO:0005515
Dere14g0553 685 SUPERFAMILY ARM repeat 394 661 IPR016024 -
Dere14g0553 685 SMART arm_5 536 577 IPR000225 GO:0005515
Dere14g0553 685 SMART arm_5 409 450 IPR000225 GO:0005515
Dere14g0553 685 SMART arm_5 451 492 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0553 Dere-ChrDere14 5682794 5684851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0553 1 670 U-box Gene Family AT1G60190 39.443 6.92e-167 493