Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0550 ATGACAAGGCTCATTCTATTTCAAACTCAAAGCACTCTTGACCCTGTCGCTCCATTCTTTGTAGGGAAGTTGTTGGATTGGAGTGCTTTGAGTTTCTTAGGGCGAAGAGTGGAAGGAGAAGAAGATGAAGAGGAAGAAGAAGTGGGCGAGGAGGTGGGGAAGAGAGGTGGAGAGACGGTGGCGATAGCTTCTTCTTCCTTGTTTCCCGAAATTCTCTCCCTCTGTGCGCGTGTGTGGGTGATCTTCTGTCAAACCCATCAATTTCTCACACTCCGCCTGTCACGGAAAAAGAAGAAGAAGAAGGTGAAGATGATGAATAGATACAGAGCTGCTTCTTCGTCTCGATTCCGAAACCATTTCTCAAAATCCTTCTCTCTCAGAAAGAAGGTTCCTTGGTGGTATCAAATCCTCGATCCCAAATCCGAATTCGTGGACCGATGGAACCGCGCCTTCCTCTACGGCTGCTTCCTTGCGCTCTTCCTCGACCCGCTCTATTTCTATTTACCCATCATCGGCAATGACAACTGCATGCAAATCGACTTGGTCCTCGGCGTCTTCGTCACTTTCTTCCGCACCCTCACCGATATCTTCTTCTTCTTTCACATTGTTCTCAAGTTCCGTACAGGCTACTTTTCTTCTCACACTTTTGGCCGCCGTGAACTCGTCATTGACCCCTCCCTCATCGCCATTCGCTATCTCAAAACCGATTTCACCGTTGATCTTCTCGCCTGCCTTCCTCTCCCTCAGATCGTGATTTGGTTCGTGATTCCCTCATTCAAAGATACAACAGCAGCTCATGCGAATCATACTTTGTCCCTCATTGTTCTTCTTCAGTATATTCCTCGATTCTTTCAGATTTTTCCTCTGCAACGCCGGATTATAAAAACTAGTGGCCTCATAACCAAGACGGCTTTGGCAGGGTCTCTATACAATCTTGGTTTTTATGTGTTGGCCAGCCATGTTTTAGGGGCTGCGTATTATTTGTTCGCGATTCAGCGTCAGTCTGAATGCTGGAGAGAAACTTGCGGCAAGGAGATGAACGGAACGCACTCTCCATCTTGTTCGCCTAAATTTCTTGATTGCGAGACCCTGAACGATCCCGCACGGGAAGCTTGGTACCACCAAACTCAACTTACTATCCTCTGTGATGCTAAGAATGAAGACAGCCGCTTCGAGTTTGGAATGTACGCTGATGCCTTTACTGATGAAGTTTCTTCATCTAGGTTCATCGAAAGATACTTTTATTGCCTCTGGTGGGGTTTGAAAAGTCTATGTGCATATGGACAAAATCTAGAAACAAGCGTCTTCGTTTCTGAATCTGTATTTGGAGGTTTCATCTGCGTCGCAGGTCTAATTCTCTTTGCGCTTCTCATTGGTAACATGCAGAACTATTTGCAATCTACTACTGCAAGACTTGAAGAATGGAGGATTAAACAAAGAGATACAGAAGAGTGGATGAGGCATCGCCAACTTCCACCAGAACTGCAAGAACGTGTTCGTCGATTTGTTCAATACAAATGGCTAGCCACTAGAGGTGTAGATGAGGAATCTATCTTGCGCGCTTTGCCTTTGGACCTTCGGCGTCAGATTCAGAGGCATCTTTGTCTTGCTTTCGTTCGTCGGGTTCCATTTTTTGGTCAAATGGATGATCAGCTGCTAGACGCCATATGTGAACGCCTTGTGTCGTCCCTGAACACAAAAGACACGTACTTAGTAAGGGAAGGAGACCCAGTAAAAGAGATGCTTTTCATCATAAGAGGACAAGTAGAGAGCTCCACAACAGATGGTGGGAGATCAGGATTCTTCAACTCTATCACCCTTAGGCCAGGTGACTTCTGTGGCGAAGAATTGCTGACGTGGGCTTTGGTCCCCACTTCCAGCACCCTTCCATCCTCCACTCGAACCGTGAAGACTCTCACTGAAGTGGAAGCATTTGCACTCAGAGCTGAAGACCTCAGATTCTTCGCCATCCAGTTTAAGAGGCTGCACAGCAAGAAAATCCAGCATGCTTTCAGGTACTATTCCCACCAATGGAGGGCTTGGGGAGCTAGTTTTATACAAGCTGCTTGGCGACGCCATGTCAAAAGGAAGTTGGCTATGGAGCTTTTGGAGAAAGAGAATCTATTAGTATCAACAGATTTGGATGGTGAAGAACCCGGTTCTGGTGGAGAGAACTCAGCCGGGAAGAATGCAACTGGAGGCCTCGCGGTTACAGTTTTGGCTTCGAAATTTGCTAAAAACACTAGAAGAGGGGCTCTTCAGAAAGTCACAATCCCTGACGAAAGCAGCTTGAAGATGCCGAAGCTGTTCAAGCCGACGGACCCCGACTTCTCAGCAGACCAAGAAGATTAG 2352 0.469 MTRLILFQTQSTLDPVAPFFVGKLLDWSALSFLGRRVEGEEDEEEEEVGEEVGKRGGETVAIASSSLFPEILSLCARVWVIFCQTHQFLTLRLSRKKKKKKVKMMNRYRAASSSRFRNHFSKSFSLRKKVPWWYQILDPKSEFVDRWNRAFLYGCFLALFLDPLYFYLPIIGNDNCMQIDLVLGVFVTFFRTLTDIFFFFHIVLKFRTGYFSSHTFGRRELVIDPSLIAIRYLKTDFTVDLLACLPLPQIVIWFVIPSFKDTTAAHANHTLSLIVLLQYIPRFFQIFPLQRRIIKTSGLITKTALAGSLYNLGFYVLASHVLGAAYYLFAIQRQSECWRETCGKEMNGTHSPSCSPKFLDCETLNDPAREAWYHQTQLTILCDAKNEDSRFEFGMYADAFTDEVSSSRFIERYFYCLWWGLKSLCAYGQNLETSVFVSESVFGGFICVAGLILFALLIGNMQNYLQSTTARLEEWRIKQRDTEEWMRHRQLPPELQERVRRFVQYKWLATRGVDEESILRALPLDLRRQIQRHLCLAFVRRVPFFGQMDDQLLDAICERLVSSLNTKDTYLVREGDPVKEMLFIIRGQVESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPTSSTLPSSTRTVKTLTEVEAFALRAEDLRFFAIQFKRLHSKKIQHAFRYYSHQWRAWGASFIQAAWRRHVKRKLAMELLEKENLLVSTDLDGEEPGSGGENSAGKNATGGLAVTVLASKFAKNTRRGALQKVTIPDESSLKMPKLFKPTDPDFSADQED 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0550 783 FunFam Cyclic nucleotide-gated ion channel 1 542 659 - -
Dere14g0550 783 Gene3D Jelly Rolls 542 661 IPR014710 -
Dere14g0550 783 FunFam Cyclic nucleotide-gated ion channel 1 471 535 - -
Dere14g0550 783 Pfam Ion transport protein 147 471 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere14g0550 783 CDD CAP_ED 544 674 IPR000595 -
Dere14g0550 783 Gene3D - 169 468 - -
Dere14g0550 783 Gene3D Helix hairpin bin 470 535 - -
Dere14g0550 783 SUPERFAMILY Voltage-gated potassium channels 139 466 - -
Dere14g0550 783 SMART cnmp_10 544 674 IPR000595 -
Dere14g0550 783 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 112 776 - -
Dere14g0550 783 SUPERFAMILY cAMP-binding domain-like 473 666 IPR018490 -
Dere14g0550 783 MobiDBLite consensus disorder prediction 764 783 - -
Dere14g0550 783 Pfam Cyclic nucleotide-binding domain 567 653 IPR000595 -
Dere14g0550 783 ProSiteProfiles cAMP/cGMP binding motif profile. 544 629 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0550 Dere-ChrDere14 5663798 5667958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0550 105 777 Ion Channels AT3G48010 63.136 0.0 895