Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0540 ATGTCACATTCTCTACACGTTGTCTCACCTGCGCGTGACGTTATCATTCTCCTTGCCCGATCTGCCCCGCACTTCTGCCCTGCCCAAGTACCAAGGACACCTTTCCTTTCGTTACTCTGTCCTTCTCTCTCTAAATTTCTCTGTCTAGATTATCACACTTTCCCTGCTAAAGATCGAAATTCGAAAGGCGGCTCGAAGTTTCCTTATCTGTTTCTTTTGTTGGATGGATCGGAGGTTCGATTGGATCTGCTTACCCCTGTAGGAGGCTTTGGAAAATTTCAGCGGGTTTTGAATTATTGGGAGCGTACTAGGGTTCCGGATTCTGGTGCAAAAATGTTACTGGAGTTGGTGTTTTGGGTGGACTTAGGGTTTCGCGGAGGTGGGATTGATGGTACTCCTTGGGTGCGAAGCTGGGATCGAGGCTGGGATTGGGGAAAATGCAAGGCTATGCATGGGCGTGGAGGTGAGGAGAGGACGAGGACTCGGCACATGTGGAAAGCCCCCACACGTGGTAACCCGACTGTAAGAGCTGCTGATGTGTCTTCTTCTTCGTTGTCGTCGTCAGTTAATTCGTTCTGTAAGGATGGTCGCAAAATTAGCATTGGTGACTGTGCTCTCTTCAAACCACCTGAAGATTGCCCACCTTTTATTGGAATAATTCATTGGGTGGCAGTTGGTAAAGAGAACAAGCTAAAGTTAGTTGTAAATTGGTTTTATCGACCTACTGAAGTAAAACTTGGCAAGGGTGTCCTATTGGAGGCTGCACCCAACGAAATTTTCTACACTTTTCATAAGGATGAGATTCCTGCAGCATCAGTGCTTCATCCTTGTAAAGTTGCATTTCTTCCTAAAGGCATCGAACTTCCATCAGGCATTTCATCTTTTGTGTGTCGGAGGGTTTATGACATAGTGAACAAGCGTTTATGCTGGCTAACCGATCAAGATTATATTTATGAGCATCAAGAAGAAGTAGATAAGCTATTATACAAGACTCGTATAGAAATGCATGCAACAGTACAGCCAGGTGGGCCATCTCCGAAGCCAATGAGTAGTCCAACATCGGCATCTCTGCTAAAATCAGGTTCAGATAGTGTCCAGAACACTCTTTCTTCCTTTCCTTCTCAAATTAAGGGTAGAAAAAGGGAAAGGATAGATCAAGGGTCAGAGCCTGTGAAGCGAGAGCGAGCAATAAAAATTGAGGATGGAGATTCTGGTCATTTTAGGCAGGATAGTTTGATAAAGTCAGAGATAGCCAAAATTACAGAAAAGGGAGGGCTTGTTGACTCTGAAGGGGTTGAGAAATTAGTGAAACTCATGATTCCTGATCGGAATGGAAAAAAGATAGATTTGGCTAGCCGGGCAATGCTTGCAGCTGTTATTGCAGCAACTGATAAGTTTGATTGTCTTAATCAGTTTGTGCAGCTAAGGGGTTTGCCAGTATTTGATGAATGGCTTCAAGAGGTCCATAAAGGGAAGATTGGTGATGGTAATGGGTCTAGGGATGGTGATAAATCTGTTGAGGAATTTCTATTGGTATTACTTCGTGCACTTGATAAGCTTCCTGTAAATCTTCAGGCCTTGCAAACTTGTAATATTGGTAAATCTGTGAATCATTTACGAACTCATAAGAGCTCAGAAATCCATAAAAAAGCAAGGGGCTTGGTTGACACATGGAAAAAACGTGTTGAAGCTGAAATGAATATTAATGATGCAAAGTCTGGTTCAGGTCAGACTGTCCCATGGCCTGCCAGACCACGGGTTTCTGAAGTTGCTCAATCTGGGCATAGGCATTCAGGTGGATCATCAGATGTTGCTATGAAGAGCTCAGTCACTCACGTTTCTGCCTCCAAAACAGCCTCTGTGAAGACTGTCCAGGGGGAGAATACTACCAGATCTACATCTCCTGTGTCTATGAAATCAGTTCCCTCACCTGCGTCTGCAACTATGAACTCAAAAGAGGGACAGCCCCGTGCTGCTGCTTGCAGTGGTGCCTCTGATCTTCCTACAGCAAATGCTAAAGATGAGAAAAGTAGCAGTTCTAGTCATTCTCAGAACAACAGTCAATCTTGCTCTAGTGACCATGTGAAAATGGGGGGTATTTCTGAAAAGGAAGATACCAGGAGCTCTACTGCAATGAGTGTGAATAAGATATCAGGTAGTTCTTCACGGCACTGGAAATTGATTAATGGATTCCCCAGTTCAGCGCCATCTGGTGGGCAAACGGAAACTGGGTCATCCAGAAATTCCTCCTTGCACAAAAATTCAACTTCAGAGAAAATGTCTCAATCTGGATTATCAGAAAAAGCACTTGATGGAACTTCCATGGAGGGGAATACTTCTAAGCTGATTGTTAAGATTCCAAACCGAGGTCGAAGTCCTGCAGATTGTGCAAGTGGTGGTTCTTTTGATGATCCTTCAATAACGAACAGCCAAGCTTCTTCTCCTGTCATTTCAGAGAAGCATGACCTGTTTGATCGCAGTTCAAAGGAGAAGATTGATTTTTGTCGAGCTAATACTGGATCAGATGTAAATACTGAGTCATGGCAGAGTAATGATTTCAAAGATGTACTTACTGGGTCTGATGAAGGTGATGGATCACCTGCTGCTACTACTGATCAAGAGCACTGTAGGATTGGTTGTGATTCTAAGAAACTGTTAGAAGCATCAAAAGATGATTCCTCATCATCCAGAAATGAAAATAAAGCAGGCAATTTACAGGATGCTTCTGTCAGCTCCATGACTGCTTTAATTGAAAGTTGTGTTAAGTACTCCAAAGTGAATGCTTCTGTATCAGTTGCAGATGATGTTGGAATGAATCTTCTTGCTAGTGTAGCTGCTGGAGAGATCTCCAAATCTGGATTAGTAACACCAGCTGGATCTCCAGAAAGAAATATCACTACCATTGAGCAGTCCGGCACTGGTGATACCGTAATTAAGTCTTCTGAAGTTCTTGTTCGAGATGAGTGTCACTCAAATGACAGTTTTGATGATGAACTTCAGAAGCTGAATTCTGTATCTGGTGATTTATTGGCAAATAATGATGATAATAAATTTGGCTCTTTGGTATCTGAAGGGAAAGCTGTAGGAGAACACAATAAGCACAGTAATTCATTGAATGAGGATTCGTGCCAGGTTACTGAATATTGTTCAGAAAGCAAAGAGAAATCAGGTGAAAAAACTGTTGCTGCTTCATTGGCTGGCTTTTCTGAAAGCACTATACAAGACGCTAGAGACGGCAGCTATGACAAACAGCTCAAGGAGAAAAAGCTTGTTGAGAGAGGAAGTGCAGATGGAAATCTCGATGTGAAGGTTGGTGATATTTCAAGAGTTGAAACAGGAGCAAATGAAAAAATATTGTTACATCCCTCTGGAGATGCTGATGTTAAGGATGATAATTGTACTACTATGGGATTAAGCAGTGGAGTGCAGACACCCCAAAAGCCTCCTGCCATTATGCAGTCTGACTCAGTAAAAGGAGAAGATGAGAATGCTCTCCAACCTGCTGGTTGTAGCCTTCACAAGGACCTAAATGAACGGGAATCTGAAAAGACAGATGATGTGGCTGCTCAGAATCATGCTAGTCAGTCTCAAAAGCAAATAAATGAGCAGGAAAGTGATGCCATGGCAATGCCTGATAATAGAGGTTTAGGTTCAAGTGAGACTGATCATGATGTGGAGTGTGTAGAGGAAAATTCAGAAACAAAAGTGGTTCATGATCAATGTTTGGGACACATAATGCACATGGCTTCACCAAGCATTCCTTCACAAGAAATGGATCAGCATATGGGCTCTAAAGGGTCAAAATTAACAGCTTTGGAACTAGACGAAGCTGAGGAATGCACTTCGACCACAGCAGATGCTTCTTCCATATCTGCTTCTGGTGTGTCAGATATGGATGCTAAAGTTGAATTTGACTTAAATGAAGGTTTCAGTGCAGATGATGGAAAATGTGGCGAGTTTAATTGCATCACAGAACGTGGATGTACTCCCCCTGTACAACTTATCAGTCCTGTGCCATATTCTGCTTCATCCATATCTAGTGGTATTCCTGTGTCAATCACTGTAGCCGCTGCTGCAAAGGGGCCCTTTGTGCCACCTGAAGATTTATTGAAGAATAAAGGGGAGCCTGGCTGGAAGGGGTCAGCAGCAACGAGTGCATTCCGACCAGCTGAGCCTCGGAAAGTTATGGAAATGCCTCTTGTTACACCGGCTGCTTCTATTCCTGATGTTGCATCTGGAAAACACAGTCGACCAGCATTGGATATTGACCTGAATGTGCCTGATGAAAGAATTCTAGTTGATATTACTTCTCAAACTTGTGCTCGTCAGACAGACTCTGTATCTCTTTCAGCTGATGGCCGTGATCCAGGATGCAATAAAACAATAGCTCCACCTGTTTGTTGCTCTGGAGGACTTGGTCTTGACTTGAACCAAGTGGATGAACCTCCTGATGTGGGCAATTGCTCCTCAAGTAATAGTCATAAAATGGATATACCGCTTTTGCGGGTAAAATCATCATCTGGTGGTCCTCCAAAGAGAGAGGTGAGTGTCTGCAGGGACTTTGATTTGAATAATGGTCCTGCAGTTGATGAAGTCAGCATTGATACATCACTTTTCACTCAGCATGACAGGAGCAGTGTTCCATCTCAACCGACTATTTCTGGACTTGGGATGAGTAATTCAGAATTGGGGAACTTATCATCATGGTTTCCTTCCACTGGGAACACCTATTCAGCTGTAACTATATCTTCGATTATGCCTGTTAGAGGAGATCAGCCCTTTTCAATTGTTGCACCTAGTGGGCCACAAAGGGTACTGGGTCCTGCTACTGGGAGCAGCTCATTTGGATCCGATGCTTATAGGGGGCCAGTATTGTCATCATCTCCTGCAGTTCCATATCCATCAACACCATTTCAATATCCCGTCTTCCCTTTTAATTCTGGCTTTCCTCTTCCATCAACATCATTATCAGGTGGATCTTCTACTTATGTAGATTCAGTATCTAGTGGGAGGTTTTGCTTCCCTGCAGTAAATTCACAGTTGATAGGGCCTGTTGGTACAGTTTCATCCCTTTACCCCAGGCCTTGTGTTGTTGGTCTGCCAGATGGTGGCAATAGCAGTAGGGCTGAGAGCAGTAGGAAATGGGGAAGACAAGGTTTAGATCTTAATGCTGGGCCTGGAGGACCAGACATAGAGGGAAGAGAGGAGACTTCACCTCTCGTGCCAAGGCAATTTTCTGTTACCAGTTCGCAAGCACTAGCTGAGGAGCAAGCAAGGATGTTTCAGATGGCTAGTGGTGTTCTTAAAAGGAAGGAGCCTGATGGTGGGTGGGATAGCCACAAGCAGTCCTCATGGCAATAG 5361 0.4376 MSHSLHVVSPARDVIILLARSAPHFCPAQVPRTPFLSLLCPSLSKFLCLDYHTFPAKDRNSKGGSKFPYLFLLLDGSEVRLDLLTPVGGFGKFQRVLNYWERTRVPDSGAKMLLELVFWVDLGFRGGGIDGTPWVRSWDRGWDWGKCKAMHGRGGEERTRTRHMWKAPTRGNPTVRAADVSSSSLSSSVNSFCKDGRKISIGDCALFKPPEDCPPFIGIIHWVAVGKENKLKLVVNWFYRPTEVKLGKGVLLEAAPNEIFYTFHKDEIPAASVLHPCKVAFLPKGIELPSGISSFVCRRVYDIVNKRLCWLTDQDYIYEHQEEVDKLLYKTRIEMHATVQPGGPSPKPMSSPTSASLLKSGSDSVQNTLSSFPSQIKGRKRERIDQGSEPVKRERAIKIEDGDSGHFRQDSLIKSEIAKITEKGGLVDSEGVEKLVKLMIPDRNGKKIDLASRAMLAAVIAATDKFDCLNQFVQLRGLPVFDEWLQEVHKGKIGDGNGSRDGDKSVEEFLLVLLRALDKLPVNLQALQTCNIGKSVNHLRTHKSSEIHKKARGLVDTWKKRVEAEMNINDAKSGSGQTVPWPARPRVSEVAQSGHRHSGGSSDVAMKSSVTHVSASKTASVKTVQGENTTRSTSPVSMKSVPSPASATMNSKEGQPRAAACSGASDLPTANAKDEKSSSSSHSQNNSQSCSSDHVKMGGISEKEDTRSSTAMSVNKISGSSSRHWKLINGFPSSAPSGGQTETGSSRNSSLHKNSTSEKMSQSGLSEKALDGTSMEGNTSKLIVKIPNRGRSPADCASGGSFDDPSITNSQASSPVISEKHDLFDRSSKEKIDFCRANTGSDVNTESWQSNDFKDVLTGSDEGDGSPAATTDQEHCRIGCDSKKLLEASKDDSSSSRNENKAGNLQDASVSSMTALIESCVKYSKVNASVSVADDVGMNLLASVAAGEISKSGLVTPAGSPERNITTIEQSGTGDTVIKSSEVLVRDECHSNDSFDDELQKLNSVSGDLLANNDDNKFGSLVSEGKAVGEHNKHSNSLNEDSCQVTEYCSESKEKSGEKTVAASLAGFSESTIQDARDGSYDKQLKEKKLVERGSADGNLDVKVGDISRVETGANEKILLHPSGDADVKDDNCTTMGLSSGVQTPQKPPAIMQSDSVKGEDENALQPAGCSLHKDLNERESEKTDDVAAQNHASQSQKQINEQESDAMAMPDNRGLGSSETDHDVECVEENSETKVVHDQCLGHIMHMASPSIPSQEMDQHMGSKGSKLTALELDEAEECTSTTADASSISASGVSDMDAKVEFDLNEGFSADDGKCGEFNCITERGCTPPVQLISPVPYSASSISSGIPVSITVAAAAKGPFVPPEDLLKNKGEPGWKGSAATSAFRPAEPRKVMEMPLVTPAASIPDVASGKHSRPALDIDLNVPDERILVDITSQTCARQTDSVSLSADGRDPGCNKTIAPPVCCSGGLGLDLNQVDEPPDVGNCSSSNSHKMDIPLLRVKSSSGGPPKREVSVCRDFDLNNGPAVDEVSIDTSLFTQHDRSSVPSQPTISGLGMSNSELGNLSSWFPSTGNTYSAVTISSIMPVRGDQPFSIVAPSGPQRVLGPATGSSSFGSDAYRGPVLSSSPAVPYPSTPFQYPVFPFNSGFPLPSTSLSGGSSTYVDSVSSGRFCFPAVNSQLIGPVGTVSSLYPRPCVVGLPDGGNSSRAESSRKWGRQGLDLNAGPGGPDIEGREETSPLVPRQFSVTSSQALAEEQARMFQMASGVLKRKEPDGGWDSHKQSSWQ 1786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0540 1786 Pfam TFIIS helical bundle-like domain 513 562 IPR017923 -
Dere14g0540 1786 SMART TFS2_5 485 564 IPR003617 GO:0005634
Dere14g0540 1786 MobiDBLite consensus disorder prediction 704 781 - -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 1701 1742 - -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 671 695 - -
Dere14g0540 1786 ProSiteProfiles TFIIS N-terminal domain profile. 479 565 IPR017923 -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 349 375 - -
Dere14g0540 1786 SMART BAH_4 197 312 IPR001025 GO:0003682
Dere14g0540 1786 MobiDBLite consensus disorder prediction 594 655 - -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 1764 1786 - -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 376 391 - -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 888 908 - -
Dere14g0540 1786 CDD TFIIS_I 487 563 - -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 1188 1204 - -
Dere14g0540 1786 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 467 576 IPR035441 -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 853 874 - -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 1138 1163 - -
Dere14g0540 1786 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 431 566 IPR035441 -
Dere14g0540 1786 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 150 1786 - -
Dere14g0540 1786 ProSiteProfiles BAH domain profile. 197 312 IPR001025 GO:0003682
Dere14g0540 1786 MobiDBLite consensus disorder prediction 802 817 - -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 1178 1204 - -
Dere14g0540 1786 Gene3D - 180 404 IPR043151 -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 567 823 - -
Dere14g0540 1786 MobiDBLite consensus disorder prediction 338 391 - -
Dere14g0540 1786 Pfam BAH domain 199 307 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0540 Dere-ChrDere14 5533270 5540222 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dere14g0540 BAH 9.6e-11 No_clan