Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0536 ATGGCAACATTTGCAGGTACTACCCAGAAGTGCAAGGCATGTGAGAAGACAGTCTATCTGGTTGATCAGCTCACTGCTGACAGCAAAATTTACCACAAGTTTTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGCTGAGTAACTATTGTTCCTTTGAGGGCGTTTTATACTGCAAGCCTCATTATGATCAACTCTTTAAGATGACAGGAAGCTTAGAAAAAAGTTTTGAAGGTATTCCTAGAACTGCTAGAGTTGTCAGATCTGCTGATCAGGTCCAAACCAATGGCAAGGTTTCAAGATTGTTTTCTGGAACACAGGAAAAGTGTGTTGCTTGCAAGAAGACAGTGTATCCAATTGAAAAGGTGGCTGTTGATGGCAAATCTTACCACAAGCCTTGTTTCAGGTGCTCCCATGGAGGTTGTGTAATTAGCCCGTCAAATTATGTGGCCCATGAACATCGTCTCTACTGTAAGCACCACCATACCCAGCTCTTCAGGCAGAAGGGTAATTTCAGTCAACTTGATCAGCATGAAAATGACAATGAAAATGTCAAAGAGGTCACTGAGAACACAACAACCCAGTGA 588 0.4303 MATFAGTTQKCKACEKTVYLVDQLTADSKIYHKFCFRCHHCKGTLKLSNYCSFEGVLYCKPHYDQLFKMTGSLEKSFEGIPRTARVVRSADQVQTNGKVSRLFSGTQEKCVACKKTVYPIEKVAVDGKSYHKPCFRCSHGGCVISPSNYVAHEHRLYCKHHHTQLFRQKGNFSQLDQHENDNENVKEVTENTTTQ 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0536 195 PANTHER OS06G0237300 PROTEIN 4 94 - -
Dere14g0536 195 SMART lim_4 109 161 IPR001781 -
Dere14g0536 195 SMART lim_4 10 62 IPR001781 -
Dere14g0536 195 FunFam LIM domain and actin-binding 1 5 75 - -
Dere14g0536 195 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Dere14g0536 195 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Dere14g0536 195 Pfam LIM domain 110 165 IPR001781 -
Dere14g0536 195 Pfam LIM domain 11 65 IPR001781 -
Dere14g0536 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Dere14g0536 195 Coils Coil 175 195 - -
Dere14g0536 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Dere14g0536 195 MobiDBLite consensus disorder prediction 176 195 - -
Dere14g0536 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Dere14g0536 195 Gene3D Cysteine Rich Protein 5 75 - -
Dere14g0536 195 Gene3D Cysteine Rich Protein 104 174 - -
Dere14g0536 195 CDD LIM2_SF3 110 170 - -
Dere14g0536 195 CDD LIM1_SF3 7 68 - -
Dere14g0536 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Dere14g0536 195 FunFam LIM domain and actin-binding 1 104 174 - -
Dere14g0536 195 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0536 Dere-ChrDere14 5504903 5507043 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Dere14g0536 LIM 3.8e-11 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0820 03 12745558 12748552 Dere14g0536 14 5504903 5507043 CCT
Dere14g0536 14 5504903 5507043 Dere14g0536 14 5504903 5507043 ECH