Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0533 ATGGTTGGAAATGGCAGGCACAGATGGAGAATCTCCTTCCACCGTCATTCCTCAAGCTCCAAGCTCGAATCAAAAGAGCCTCCCAACGAGCTTATATGCCCAATATCTGGGTGTCTAATGTCCGAACCTGTTGTAGTCTCCTCAGGTCAGACCTTTGAGCTGGTTTGTGTTCAAGTGTGCAGAGATTTGGGTTTCACTCCCAAGTTAGGAGACGGGTCCTTACCCGATTTCTCAGTCATCATTCCCAATTTGGCCATCAAAACCACGATCTCCAATTGGTGCGTTAAATCGGGTTTGGAGACCCCTCGCCCGCCGCATTATGGCTCCGTAGAGAGGCTTGTCCGTGCAGCAATGGCGTCCCAGCACGAAACGCAAGAGCTCGGTTTAAGGATTTCAGATAAGGAATTGCTTAAGGCCGTGGCGGATAACTCGCCGGTGATTTTCTCTCACGCCGCGACGGAGTTGGGTCCCCGGGTCAACCACTTCACAATGAGTTCATCCGGGGAATCAGTGGCCACCGCATTGAGCCCCGAGACTCCTTTGCCTCTCGCGACTCGTCCTACCTGTTACTCTTCGTCGTCTTCTTCCATCGAAATTACCGAGAACGAGCTCCAGAGCCAGAACTATATTGGCCCAATTTCCGAAGAAGAGGAGAATATAGTGTCGAAGCTGAGGAGCACCGAAGCTGCGGAGCAAGAAGAAGCGGTTATTTCGCTGAGAAACATCACAAGGACCAGAGAGGATACCAGAATTTCTCTCTGCACGCCTGCGCTGCTCTCATCACTCCGATCCTTGATCCTCTCGAAGCACCCCGTAGTGCAAGTAAACGCCGTCGCATCGCTGGTCAATTTCTCCCTGGATAAATCCAATAAAGTAAAATTCGCAAGGTCAGGGTTTATCCCTTTCCTCATCGAAGTCTTGAAAGGGAGAAACCCCGAGTCGCAGGAGCACGCAGCGGGAGCACTATTCAGCTTGGCCTTAGACGACGAGAACAAAATGGCCATTGGAGTTCTCGGCGCGTTGGAGCCACTCATGCACGCGTTGACGTCCGAGTCGGAACGGACTCGGCACGACTCGGCGCTCGCGTTGTACCACCTGAGCTTGGTTCAGAGTAACAGGGTGAAGCTGGTGAGGCTCGGGGTGGTGCCGACGCTGCTATCGATGGTGAAATCGGGGAATTCGGCGAACCGTGTTTTGCTGATTTTGTGTAATCTTGCGGCGTGTACGGAGGGGCGAACGGCGATGCTGGACGCGAATGCAGTGGAATGCTTGGTGGGTGTGCTGAGGGAGAAGAAGGGGGTGGAGTGGGAGGCGACGAGGGAGAACTGTGTGGCGGCGTTGTACGGAATGAGCCATGGAAGCTTGAGGTTCAAAGGGTTGGCAAACGAAGCAAAGGCTGTTGAGGTGTTGAGGGAGGTTGAACAGAGAGGAACACAGAGGGCACGAGAGAAGGCCAAGAGGATGTTGCAGATGATGAGGGCAGAAGCAGGTGGGGGCGAAGGGGCGGATGAAAACGGTGTCGGTTGTGATGGGGCGTTGGATTCGGGCGGGTTGGGTCGAGCCCGGGTCGGAGTTGGTAGTCGGAGGAATCTTAACGTAGCCAACTCGACTACATTTTAA 1620 0.5395 MVGNGRHRWRISFHRHSSSSKLESKEPPNELICPISGCLMSEPVVVSSGQTFELVCVQVCRDLGFTPKLGDGSLPDFSVIIPNLAIKTTISNWCVKSGLETPRPPHYGSVERLVRAAMASQHETQELGLRISDKELLKAVADNSPVIFSHAATELGPRVNHFTMSSSGESVATALSPETPLPLATRPTCYSSSSSSIEITENELQSQNYIGPISEEEENIVSKLRSTEAAEQEEAVISLRNITRTREDTRISLCTPALLSSLRSLILSKHPVVQVNAVASLVNFSLDKSNKVKFARSGFIPFLIEVLKGRNPESQEHAAGALFSLALDDENKMAIGVLGALEPLMHALTSESERTRHDSALALYHLSLVQSNRVKLVRLGVVPTLLSMVKSGNSANRVLLILCNLAACTEGRTAMLDANAVECLVGVLREKKGVEWEATRENCVAALYGMSHGSLRFKGLANEAKAVEVLREVEQRGTQRAREKAKRMLQMMRAEAGGGEGADENGVGCDGALDSGGLGRARVGVGSRRNLNVANSTTF 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0533 539 Pfam Armadillo/beta-catenin-like repeat 328 367 IPR000225 GO:0005515
Dere14g0533 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 335 IPR000225 GO:0005515
Dere14g0533 539 Pfam U-box domain 28 94 IPR003613 GO:0004842|GO:0016567
Dere14g0533 539 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Dere14g0533 539 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Dere14g0533 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 101 IPR013083 -
Dere14g0533 539 SMART arm_5 328 368 IPR000225 GO:0005515
Dere14g0533 539 SMART arm_5 287 327 IPR000225 GO:0005515
Dere14g0533 539 SMART arm_5 408 452 IPR000225 GO:0005515
Dere14g0533 539 PANTHER U BOX DOMAIN-CONTAINING 23 493 - -
Dere14g0533 539 FunFam RING-type E3 ubiquitin transferase 215 492 - -
Dere14g0533 539 SUPERFAMILY ARM repeat 218 490 IPR016024 -
Dere14g0533 539 Gene3D - 214 491 IPR011989 -
Dere14g0533 539 SUPERFAMILY RING/U-box 14 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0533 Dere-ChrDere14 5461082 5462701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0533 1 539 U-box Gene Family AT5G65200 53.723 0.0 555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere14g0533 14 5461082 5462701 Dere14g0533 14 5461082 5462701 ECH