LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere14g0530	ATGGAAGCAAACGGCTCGTACGGCACATCCTGGGCTGACCAGTGGGACAACAATCCTGACCCTGTGGCCGTCGACGGCAAGAAGAACCACGCCGGAGCCGCCAAATACAAGCAGAAAGTCGGAGACGGAGTCGAGAAGACGAAAGCTGTGGCCAAAACTGGCTTCTCCAAGTTGAAGGAGGGTACCTCCGTTGGCATCAACTGGATCAAGACCAAATTTTGCTTCTTCATCAATCTATGGCGTCCACTTCCCCTTTTCCCTCATCGGCAATTTCCCGCGAACCCTTCTCCCTCATCGACACAAATCTGTTCAGCTAAATTGGCAGAAATGGCGATCTCAGTGCCCAATCGGCAGTTATTCATAGATGGGGAGTGGAAAGAGCCAGTTCTCAAGAAGCGAATTCCCATCGTCAACCCTTCTACTGAAGAAATAATTGGTGATATTCCAGCTGCCACTTCAGAAGATGTGGAGCTTGCTGTGGCTGCTGCTAGAAGAGCCTTCACTCGGAATAAGGGGTCAGATTGGTCATCGGCTCCTGGGTCAGTTCGAGCTCGGTATCTGCGAGCTATTGCGGATAAGATCAAAGAGAGGAAGTCTGAACTAGCAAAGCTCGAAGCAATTGATTGTGGAAAACCACTGGAAGAAGCAGCATGGGACATTGATGATGTTGCTGGTTGCTTTGAGTACTATGCTGATCTTGCTGAAGGATTGGATGCAAAGCAAAAGGCTCCTATATCTATTCCCATGGACACTTTTAAGTCTTATGTTCTTAAGGAGCCCTTAGGGGTTGTTGGATTAATTACTCCCTGGAATTACCCTCTATTAATGGCTACATGGAAAGTTGCCCCAGCTTTGGCTGCTGGTTGTACTGCCATATTAAAGCCTTCCGAATTGGCATCTGTGACCTGTTTGGAGCTGGCTGATGTTTGTAGAGAAGTGGGTCTTCCACCAGGTGTCTTAAATATTCTCACTGGATTAGGCCCTGAAGCTGGTGCCCCTTTGGCATCCCATCCTCATGTGGACAAGATTGCCTTTACTGGAAGCTCTGCAACTGGGAGCAAGATTATGACGGCAGCAGCTCAACTGGTCAAGCCTGTTTCGCTAGAGCTTGGTGGAAAAAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGATAAGGCTGCCGAATGGACAATCTTTGGCTGCTTCTGGACAAATGGTCAAATATGCAGTGCAACATCTCGTCTTATTGTACATGAAAGTATAGCAACAGAATTTTTGAATAGACTTGTGAAATGGATCAAAAACATCAAAATATCAGATCCCTTGGAAGAAGATTGCAGGCTAGGCCCTGTTGTTAGTGAAGGACAGTATGCAAAAATATTGAAGTTCGTTGAAACTGCTAAGAGTGAGGGTGCAACAATTTTGACTGGTGGTTCTCGGCCTGAGCATTTAAAGAAGGGATTCTTTGTTGAGCCAACTATTATAACTGATGTGACTACTTCCATGCAAATTTGGCGAGAAGAAGTTTTTGGACCTGTTCTCTGTGTAAAATCGTTTAGTAATGAGGAAGAAGCTATTGAGCTAGCAAATGACACCCATTATGGATTAGGCGCAGCAGTAATATCAAATGATCTAGAAAGATGTGAGCGTGTAACCAAGGCTTTTCAGGCTGGGATTGTTTGGATCAATTGCTCTCAGCCATGCTTCACTCAAGCCCCATGGGGAGGCAAAAAACGTAGTGGCTTTGGTCGTGAATTAGGAGAATGGGGACTTGATAACTACCTGAACGTGAAGCAAGTCACACAATACATCTCTGATGAACCTTGGGGTTGGTACTCGAGTCCTTCAAAGCTGTGA	1839	0.46	MEANGSYGTSWADQWDNNPDPVAVDGKKNHAGAAKYKQKVGDGVEKTKAVAKTGFSKLKEGTSVGINWIKTKFCFFINLWRPLPLFPHRQFPANPSPSSTQICSAKLAEMAISVPNRQLFIDGEWKEPVLKKRIPIVNPSTEEIIGDIPAATSEDVELAVAAARRAFTRNKGSDWSSAPGSVRARYLRAIADKIKERKSELAKLEAIDCGKPLEEAAWDIDDVAGCFEYYADLAEGLDAKQKAPISIPMDTFKSYVLKEPLGVVGLITPWNYPLLMATWKVAPALAAGCTAILKPSELASVTCLELADVCREVGLPPGVLNILTGLGPEAGAPLASHPHVDKIAFTGSSATGSKIMTAAAQLVKPVSLELGGKSPIIVFEDVDLDKAAEWTIFGCFWTNGQICSATSRLIVHESIATEFLNRLVKWIKNIKISDPLEEDCRLGPVVSEGQYAKILKFVETAKSEGATILTGGSRPEHLKKGFFVEPTIITDVTTSMQIWREEVFGPVLCVKSFSNEEEAIELANDTHYGLGAAVISNDLERCERVTKAFQAGIVWINCSQPCFTQAPWGGKKRSGFGRELGEWGLDNYLNVKQVTQYISDEPWGWYSSPSKL	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere14g0530	612	PANTHER	ALDEHYDE DEHYDROGENASE	112	611	-	-
	Dere14g0530	612	Pfam	Aldehyde dehydrogenase family	130	594	IPR015590	GO:0016491
	Dere14g0530	612	SUPERFAMILY	ALDH-like	100	595	IPR016161	GO:0016491
	Dere14g0530	612	MobiDBLite	consensus disorder prediction	1	29	-	-
	Dere14g0530	612	FunFam	NAD/NADP-dependent betaine aldehyde dehydrogenase	121	386	-	-
	Dere14g0530	612	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	133	592	IPR016162	GO:0016491
	Dere14g0530	612	Coils	Coil	187	207	-	-
	Dere14g0530	612	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	396	407	IPR016160	GO:0016491
	Dere14g0530	612	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	376	567	IPR016163	GO:0016620
	Dere14g0530	612	CDD	ALDH_F10_BADH	136	596	-	-
	Dere14g0530	612	FunFam	Betaine aldehyde dehydrogenase	372	563	-	-
	Dere14g0530	612	MobiDBLite	consensus disorder prediction	1	16	-	-
	Dere14g0530	612	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	368	375	IPR029510	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere14g0530	Dere-ChrDere14	5429344	5437262	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere14g0530	110	610	Aldehyde Dehydrogenase Gene Family	AT1G74920	82.834	0.0	885