Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0519 ATGTCTCGCACGTGTGCCGCCGCTGATTCAACCATTGCCGGCGACGGTGATGGTTCCGCCGCCGGTGCTGGAGAGATCATGCTGTTTGGGGTTAGAGTTGTGGTTGATTCGATGAGGAAGAGCGTGAGTATGAATAATCTCTCTCAGTACGAGCATCCTCAGGACGCCTCGAACAACAATCACGGCAACAAGGAAGATACTCTGGCCGCCGGCTATGCCTCAGCTGATGAAGCTGCAGCTCACAATTCCGGCAGGCATCGTGAGCGCGAGCGTAAGCGAGGGGTTCCATGGACCGAGGAAGAGCACAAGCTGTTCTTGCTGGGATTGCAGAAAGTTGGGAAAGGTGATTGGAGGGGGATCTCAAGGAACTATGTCAAAACTCGGACCCCAACACAGGTCGCGAGCCATGCTCAGAAGTACTTTCTCCGTCGAAGCAATCTTAATCGCCGACGCCGTAGATCCAGCCTTTTTGATATTACTACCGACACGGTCTCTGCAATCGCAATGGAAGGAGAACAGATCCAGCATCAGGATTATGTGTCTCATGCAAATCCTGTGTGCCCTACAACCCCTGAAATTAGCAACATCAATGGATTTCCAATGATGCCGGTATATCCGATGGGTGTTGGTTCTGGAATGATTTCAGTCCCAGTTGGGAATCCAATGGAAAAACTCACTCTGGGACAAGGAATTGTGGAGCCCAATGGGCCGTCCCAGCTAGTCCGTTCAATTCCTGTTCTTCCAGATCCTAAAACTTCCACGGCTTCTAATATCACCTCGAGTTCGAGTTCAGCTGTTGATCCACCAACGTTGTCTCTCGGGCTATCCTTGTCTGCTGATCAAAGACAGACATCATCAAGGCATTCATCTATACATGCAATGCCATGTTTCAACAATGGAGATAACATCATTAGTGTTGCTTGA 924 0.5 MSRTCAAADSTIAGDGDGSAAGAGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDASNNNHGNKEDTLAAGYASADEAAAHNSGRHRERERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIAMEGEQIQHQDYVSHANPVCPTTPEISNINGFPMMPVYPMGVGSGMISVPVGNPMEKLTLGQGIVEPNGPSQLVRSIPVLPDPKTSTASNITSSSSSAVDPPTLSLGLSLSADQRQTSSRHSSIHAMPCFNNGDNIISVA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0519 307 Gene3D - 95 147 - -
Dere14g0519 307 SUPERFAMILY Homeodomain-like 91 146 IPR009057 -
Dere14g0519 307 ProSiteProfiles Myb-like domain profile. 89 141 IPR001005 -
Dere14g0519 307 MobiDBLite consensus disorder prediction 80 95 - -
Dere14g0519 307 SMART sant 93 143 IPR001005 -
Dere14g0519 307 MobiDBLite consensus disorder prediction 246 273 - -
Dere14g0519 307 MobiDBLite consensus disorder prediction 249 273 - -
Dere14g0519 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 143 IPR006447 GO:0003677
Dere14g0519 307 Pfam Myb-like DNA-binding domain 96 141 IPR001005 -
Dere14g0519 307 ProSiteProfiles SANT domain profile. 92 145 IPR017884 -
Dere14g0519 307 CDD SANT 96 141 IPR001005 -
Dere14g0519 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 145 IPR017930 -
Dere14g0519 307 PANTHER TRANSCRIPTION FACTOR KUA1 2 251 - -
Dere14g0519 307 MobiDBLite consensus disorder prediction 76 95 - -
Dere14g0519 307 FunFam transcription factor MYB1R1 95 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0519 Dere-ChrDere14 5356217 5357889 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere14g0519 Myb_DNA-binding 1.7e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0847 03 13073590 13075229 Dere14g0519 14 5356217 5357889 CCT
Dere14g0519 14 5356217 5357889 Dere14g0519 14 5356217 5357889 ECH