Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere14g0486 ATGAAGGAAGGTAGGGGTATGATAGGAAGCAGCAAACTGTATATGCATAAAGCCTTGATGGTTTATTCTCCCAAGAGAAAGAAAAAGTCTCTATCTTTCTCTGCGCTGCGAGACTTCGGCTCCAGGAATTGCCCATTTCTGCTTCTTCTGAGTGACACTGATGGGGTCTTTAGCGGTGGCCCTGCAGATGGAAATGGATATGCTTCCACTTTGAGTTTGCTACTTCACAAACCAAACGCTCCTTCCACTACTCCTGATGCTTTTTTCCTTCATGGCTCTTCCCCTTCTTTCCTCGGTTCAAGATCCCTGGTGAGCTTCGCAGACGTGCAAGGAGGAAAGGGTGGTAGTGATACTGATAGGTCGTTCTTCCGTCCCTTTGTTCACGACGGTGAAATTGGAGAAGATGACATGGAAGAGTATATTCATCAACCCGAGAAGAAGAGGCGGCTAACTGCTGGCCAACTTCAGTTTCTCGAGAAAAGCTTCGAATCAGAGAACAGGCTCGAACCAGAAAGGAAAATCCAGCTAGCCAAGAACCTCGGATTGCAGCCTCGGCAAGTTGCGATTTGGTTCCAGAATCGACGTGCACGGTGGAAGACCAAGCAGCTGGAGAAGGACTACGAATCTCTGGAAGCTAGCTATACCAGTCTTAAGGACAACTACGAGAACCTCCTCAAGGAGAAAGACAGATTAGAAGCAGAGGTTGCCAATCTCAGGGAAAAAGTGCTTCTAAGAGAGGAAACAGAGACAAAGAAATTGCAGGAACCAGCGCAAAAGTGTGTGTTTGATTTAGCTCCTGTTGTGGATTGTAAACAAGAAGGCATAATTAGCACAGCTAAGAGTGACATATTCGATTCAGAAAGTCCACATTACAGAGATGGCGTTCGCTCTTCACTGCTAGAACACTGTGATTCTTCGTATGCATTTGAACCTGATCAATCTGATCTATCTCAGGACGAAGAAGATAACTTGAGCAGGAGCCTATTTCCTCCATACATGTTTCCCAAGCTTGAACATGTTGACGATGATTACTCCGACCCGTGTCATTTTGGATTTGCAGAGGAAGATTATGCCCTTTGGTTCTGTACTGGGAGACACGGGAGCCCTGTGGGAAGCGTCGAAGAAAGACGCAGAGAGAAATCGGGCCTCCGCGTCCCATCAGGGGGTACCCCTCACGGTGTAGCCACTCATATGATGCCACGTGGGAAACCTCACGAATCCCAAGGGTTCATTTTAAGGGCTTCAGCCGATTGGGGTCACGTGTACGGCCAAGATGAAACGACGTCGCCGCCTTTTGAAGGATCTTCTTCAAAATCAAAACACAAGGAGGACTCAAAAGCATTACCACCTGACATCTCCCCCCATTGGAAGTGGAACTGGTGTGATCGTGTTGATTTGGAAGGCGACGACAAAGGACGCATTTTCCCCGAAGGTGTGATCGCCTTTCATCTACGCCCTAATCCCAGAACTCGTCATCAACTCAAGCTGACCACCAGAGATTTCAAGCACAGCATCGGAAGAGGCATTCGTCGGCAATCATCATAG 1545 0.4783 MKEGRGMIGSSKLYMHKALMVYSPKRKKKSLSFSALRDFGSRNCPFLLLLSDTDGVFSGGPADGNGYASTLSLLLHKPNAPSTTPDAFFLHGSSPSFLGSRSLVSFADVQGGKGGSDTDRSFFRPFVHDGEIGEDDMEEYIHQPEKKRRLTAGQLQFLEKSFESENRLEPERKIQLAKNLGLQPRQVAIWFQNRRARWKTKQLEKDYESLEASYTSLKDNYENLLKEKDRLEAEVANLREKVLLREETETKKLQEPAQKCVFDLAPVVDCKQEGIISTAKSDIFDSESPHYRDGVRSSLLEHCDSSYAFEPDQSDLSQDEEDNLSRSLFPPYMFPKLEHVDDDYSDPCHFGFAEEDYALWFCTGRHGSPVGSVEERRREKSGLRVPSGGTPHGVATHMMPRGKPHESQGFILRASADWGHVYGQDETTSPPFEGSSSKSKHKEDSKALPPDISPHWKWNWCDRVDLEGDDKGRIFPEGVIAFHLRPNPRTRHQLKLTTRDFKHSIGRGIRRQSS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere14g0486 514 Pfam Homeodomain 146 199 IPR001356 GO:0003677
Dere14g0486 514 SUPERFAMILY Homeodomain-like 137 203 IPR009057 -
Dere14g0486 514 MobiDBLite consensus disorder prediction 422 450 - -
Dere14g0486 514 Gene3D - 139 209 - -
Dere14g0486 514 SMART HOX_1 144 205 IPR001356 GO:0003677
Dere14g0486 514 PRINTS Lambda-repressor HTH signature 181 197 IPR000047 GO:0003677
Dere14g0486 514 PRINTS Lambda-repressor HTH signature 172 181 IPR000047 GO:0003677
Dere14g0486 514 MobiDBLite consensus disorder prediction 436 450 - -
Dere14g0486 514 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Dere14g0486 514 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 136 290 IPR045224 GO:0003700
Dere14g0486 514 MobiDBLite consensus disorder prediction 368 401 - -
Dere14g0486 514 FunFam homeobox-leucine zipper protein ATHB-6-like 149 195 - -
Dere14g0486 514 Coils Coil 193 248 - -
Dere14g0486 514 CDD homeodomain 146 202 IPR001356 GO:0003677
Dere14g0486 514 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Dere14g0486 514 Pfam Homeobox associated leucine zipper 201 242 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere14g0486 Dere-ChrDere14 5002331 5005696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere14g0486 86 350 Homeobox Transcription Factor Family AT3G01470 39.928 1.39e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere14g0486 Homeodomain 1.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere03g0883 03 13538032 13539676 Dere14g0486 14 5002331 5005696 ECH
Dere14g0486 14 5002331 5005696 Dere14g0486 14 5002331 5005696 ECH